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Sample 3300007751
3300007751: Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', co14ic 200bp-25jan2016
Overview
| Basic Information |
| IMG/M Taxon OID | 3300007751 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0117787 | Gp0124801 | Ga0105549 |
| Sample Name | Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', co14ic 200bp-25jan2016 |
| Sequencing Status | Finished |
| Sequencing Center | University of New South Wales |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 182683688 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| Not Available | 2 |
| All Organisms → cellular organisms → Eukaryota | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → C. Singaporensis (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information |
| Location | Upa-Upasina 'control' site, Papua New Guinea |
| Coordinates | Lat. (o) | -9.828217 | Long. (o) | 150.820517 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F064809 | Metagenome | 128 | N |
| F085224 | Metagenome | 111 | N |
| F087060 | Metagenome | 110 | N |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0105549_1034348 | Ga0105549_10343482 | F087060 | MTQSHTTSNDTSAKQVVRTLSGITQGKPVVTGDAPQTKKFDPVADQDNRLMQMLELSLAIKDKKSEYDDLRKSFTNDLKAALDDNEENPKIRHSENERVHVYLSKRRVYKYSDKLTAKRLKLEAQMADLKDEEAKEVRHNKAELTKETFTVSFKG* |
| Ga0105549_1074360 | Ga0105549_10743602 | F064809 | MEISMLTTTFTGNITFAEIVSQDGQGNNLDNPFLAIKVAVNDVNDNGLTIAVRTKNGLLEAAQNGEDLVGTRVVIAGSIELPSIRSHWVDNDGNLVALKKPQCRVYANTIERLNRKPAPDTVQKELAIK* |
| Ga0105549_1128691 | Ga0105549_11286911 | F085224 | LLRFKAIVMFPYSVFSGMMLELLEMGAPMFYPSKSLLKRWDEQYGIMTQRTSAEGKRNAGGFSNVAYGKDSAPDPNDSVNQDALHYWLEKSEWYNWDVRYFDSPADLHEQLKQADFEALHRDVLKTRARMDKIRDERWAEIRRDLTKTNSSGV* |
