NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007908

3300007908: Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_686d_1



Overview

Basic Information
IMG/M Taxon OID3300007908 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118143 | Gp0131537 | Ga0111547
Sample NameMicrobial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_686d_1
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Liverpool
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size76784824
Sequencing Scaffolds9
Novel Protein Genes12
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1
Not Available1
All Organisms → cellular organisms → Bacteria2
All Organisms → Viruses → Predicted Viral2
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.2
All Organisms → cellular organisms → Archaea → TACK group1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAnaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Alternative Ecosystem Assignments
Environment Ontology (ENVO)estuarine biome → estuary → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationUnited Kingdom
CoordinatesLat. (o)54.9632021Long. (o)-1.6348029Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002151Metagenome / Metatranscriptome589Y
F006143Metagenome380Y
F021528Metagenome / Metatranscriptome218N
F025033Metagenome203N
F030418Metagenome185Y
F042655Metagenome158Y
F049307Metagenome / Metatranscriptome147Y
F051104Metagenome / Metatranscriptome144Y
F077264Metagenome / Metatranscriptome117Y
F103182Metagenome101Y
F106103Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0111547_1001790All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon3610Open in IMG/M
Ga0111547_1002037Not Available3366Open in IMG/M
Ga0111547_1002796All Organisms → cellular organisms → Bacteria2851Open in IMG/M
Ga0111547_1003189All Organisms → Viruses → Predicted Viral2660Open in IMG/M
Ga0111547_1003961All Organisms → Viruses → unclassified viruses → Circular genetic element sp.2368Open in IMG/M
Ga0111547_1004178All Organisms → Viruses → Predicted Viral2288Open in IMG/M
Ga0111547_1008334All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1546Open in IMG/M
Ga0111547_1011526All Organisms → cellular organisms → Bacteria1281Open in IMG/M
Ga0111547_1033067All Organisms → cellular organisms → Archaea → TACK group651Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0111547_1001790Ga0111547_10017904F103182MTKIEVYKDYGVFSSKSKSKTKTRRPPKKLQQCVKCGRVGDAMTKHSLTGEHKPPFVWLCRQPCHDEVHKFGLKMTEEEKAALKRQPQCTIQFPPEVDIANPLAKLIEPESLEGGKFKQSFKRMDSKNEERN*
Ga0111547_1002037Ga0111547_10020373F006143MTDTETPIEEKKTPTTKFAEWLMARAEKKEAKETSLESLMKFNVFLSIATLVSVAGATVADYVLMAWLWI*
Ga0111547_1002796Ga0111547_10027961F021528KAYLNTDNWNLTLKPLAGGRATGAFLQLSVPKNYYGSNFYSVGEQGTQAVLNKVEGELKERGVHTSLIEADMSRVDTFKNIEPEEPFSSYYSLFSLLKARKAIQRGYGTTFLLSNSQQEFCVYDKLEEMRERNIETTNLPNTMRFEHRLLNKQKIQNVYGFGKVAELFKGGYEVVKEKQVESWESSLFNFTAEELVLIGSKQLEQEMKRFKEKSPSGWFSKFLKAYGAYYLASFAGKEAVIEALKNAEAERTMIWRAVQKFEEAERELLILKQEEGSKKTLGALYEELRRKVCLN*
Ga0111547_1002796Ga0111547_10027962F051104VFELRIAEAIEEEARLSQNLIEEGFLHAFKAGELIGEVKSILHSEGEVEGWLESNCSQVEREVLKSCMRLFNGETVSVQATKKEERTTKEKEVE*
Ga0111547_1003189Ga0111547_10031894F077264MAYGKIWNLRADSTWIEAVKVQAIEAGRSNPGAYVRDLVWALANNPTIKNRIFEIMQGARYGQSR*
Ga0111547_1003961Ga0111547_10039611F030418QNDPGLSQGFTGNMSIQPTNRDAGFFGDLGSTIGSFGSNVGQFFNDISPLTSLFGGGRSLPRTNSGTAISIDTGRPQETSQSGEILGASLGLAPALFQGARGLLRTPGGQTALGFGAGALGAAFAGNGSSAPRITRKMKSDVRRIYMMAGMDPAATAQILNNLGTYPRIDFNASVVFFILTKRFRNDGPVVTKAAVRKTKTTLRRMKNVADMYNSVCKPKPRSPRPRAAPKAVQLIKN*
Ga0111547_1003961Ga0111547_10039614F002151MELSNYIALGCSIVAFALSVIACARIGKFSKATADTDWETLANLTGDIAALKRTCQTLNNRLNGMNKATIPQEQIIQQMLEHQNVEQIKRGG*
Ga0111547_1004178Ga0111547_10041784F106103MEQEIMHFWHEIDDKIQDLIQLIRSRHTRFNGTPVEKVIVRLSDAYKASGQVADAIDKGWLQ*
Ga0111547_1008334Ga0111547_10083342F049307MMLTPDEYMSLMRLITSERESEGSSLADRDGPPSPPVKKRSRSARRADKILSMAFKQANARYRKKDGSLRAGRTQADIARLAHKLRKKM*
Ga0111547_1008334Ga0111547_10083343F025033MNRRIKRNRAVPIHITLAPGLLDEIDARLSHKMSRSNWIRGACEMKLDKDVTEVNDLTDKQLLNILRNRHNYDGPAEAILKSLLEVLSE*
Ga0111547_1011526Ga0111547_10115262F051104LRIAEEIEKEAKLSQELIQEGFWHAFRAGELIQEVKSMLNWKEEREEAVEGWLEDNCSQVELSVLKNCRKLFNGETVKVEATKREQ*
Ga0111547_1033067Ga0111547_10330671F042655SILSHQGKDNYVLNKEIKKPKRLNTELLELWLERELDIENPGSYGNLPTDEGHVTVQALPDGNYKLTISNACFGMIKSHVQPEPHSRRKLTDEDILRCWLEIKIEEDETEHRVKVKELK*
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