NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008058

3300008058: Human stool microbial communities from NIH, USA - visit 2, subject 159510762 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008058 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053096 | Ga0114167
Sample NameHuman stool microbial communities from NIH, USA - visit 2, subject 159510762 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size111563152
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042737Metagenome / Metatranscriptome157Y
F074964Metagenome119N
F084124Metagenome112Y
F089053Metagenome109Y
F089054Metagenome109N
F090484Metagenome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0114167_100112All Organisms → Viruses136139Open in IMG/M
Ga0114167_100150All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales111550Open in IMG/M
Ga0114167_102077All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii8042Open in IMG/M
Ga0114167_102903All Organisms → cellular organisms → Bacteria5079Open in IMG/M
Ga0114167_106436All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus1522Open in IMG/M
Ga0114167_108424All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1071Open in IMG/M
Ga0114167_113497All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus627Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0114167_100112Ga0114167_1001122F090484MIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNLPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIKDKLVKRFENVQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIGNMDISTQSLPNISITVGNDKELDGESVFKDIPLEELSFYSDTYLYPSSQYSSL*
Ga0114167_100150Ga0114167_10015055F042737MKLTAKSSEVFDYVKSNGGHVSIDEICNAIGRASRSVGANVTDLQKKGLVEREKVEVEGTEKPVVYVNLTDAGTTFVPSDDAE*
Ga0114167_102077Ga0114167_1020775F084124LNITALAFARATKENTLPFHGQRNALTVFLAFPVTMAIACFNKLSFSTQTTTLFAPEELLYRKILWALPKPASL*
Ga0114167_102903Ga0114167_10290310F089054MLTSGKFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQQINPWHKHSTYIRLKLREILKVNLTDITIIDIISLP*
Ga0114167_106436Ga0114167_1064361F074964MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANCADLKAICKALEIPAEYAVKVASLAKDKKRLVAVCSQMLPKVDDTFVKFALYSKVYKDTNVDKEKGIEAKTADWCAENVVYGSEYKAFGFTTAESLETKKSTKWLIKENDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESTQQ*
Ga0114167_108424Ga0114167_1084241F089053LFAFGSRNGCVVDECRTVKGCIRKWLYIFANGQLKLSTAEEVNVKNMEVSL*
Ga0114167_113497Ga0114167_1134971F074964NAVIKENASNLVGAVKLYNALFANCADLKAVCKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFIKFSLYSKVYKDNKVDKEKGIEAKAADWCSDNVVYGGEYKPFGFATAETLETKSSAKWIVKETDEYKSTYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*
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