Sample 3300008079

Overview

Basic Information
IMG/M Taxon OID	3300008079 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052886 \| Ga0105956
Sample Name	Human stool microbial communities from NIH, USA - visit 1, subject 160582958 reassembly
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	120264565
Sequencing Scaffolds	11
Novel Protein Genes	11
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Sanguibacteroides → Sanguibacteroides justesenii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → environmental samples → Faecalibacterium sp. CAG:74	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → Parabacteroides johnsonii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F051936	Metagenome	143	N
F055775	Metagenome	138	N
F068941	Metagenome	124	N
F070133	Metagenome	123	N
F072366	Metagenome	121	N
F073574	Metagenome	120	N
F076190	Metagenome	118	Y
F089005	Metagenome	109	N
F089054	Metagenome	109	N
F102166	Metagenome	102	N

Family

Category

Number of Sequences

3D Structure?

F051936

Metagenome

143

F055775

Metagenome

138

F068941

Metagenome

124

F070133

Metagenome

123

F072366

Metagenome

121

F073574

Metagenome

120

F076190

Metagenome

118

F089005

Metagenome

109

F089054

Metagenome

109

F102166

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0105956_100176	Not Available	84851	Open in IMG/M
Ga0105956_100579	Not Available	33034	Open in IMG/M
Ga0105956_103107	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Sanguibacteroides → Sanguibacteroides justesenii	5236	Open in IMG/M
Ga0105956_106309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2434	Open in IMG/M
Ga0105956_107557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2027	Open in IMG/M
Ga0105956_109497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1597	Open in IMG/M
Ga0105956_111568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → environmental samples → Faecalibacterium sp. CAG:74	1302	Open in IMG/M
Ga0105956_115924	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → Parabacteroides johnsonii	931	Open in IMG/M
Ga0105956_117162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	862	Open in IMG/M
Ga0105956_117624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	840	Open in IMG/M
Ga0105956_126039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	557	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0105956_100176

Not Available

84851

Open in IMG/M

Ga0105956_100579

Not Available

33034

Open in IMG/M

Ga0105956_103107

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Sanguibacteroides → Sanguibacteroides justesenii

5236

Open in IMG/M

Ga0105956_106309

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

2434

Open in IMG/M

Ga0105956_107557

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

2027

Open in IMG/M

Ga0105956_109497

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

1597

Open in IMG/M

Ga0105956_111568

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → environmental samples → Faecalibacterium sp. CAG:74

1302

Open in IMG/M

Ga0105956_115924

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → Parabacteroides johnsonii

931

Open in IMG/M

Ga0105956_117162

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

862

Open in IMG/M

Ga0105956_117624

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus

840

Open in IMG/M

Ga0105956_126039

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

557

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0105956_100176	Ga0105956_10017694	F089054	MLTKGKFPVSFEVPGHTKDYPEGFTEEMVIPYRTEELNPYLRYPHQEINKNHLHSEFIRLMLREILQINLSDITIIDIIPLP*
Ga0105956_100579	Ga0105956_10057912	F055775	MAQIAQQDNLVIEVTTTAAALDGDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGAVKAIALN*
Ga0105956_103107	Ga0105956_1031076	F051936	ALRGKAFGFSVLQEHAVMTPVISIFFAILIIRYLSIHISIKK*
Ga0105956_106309	Ga0105956_1063094	F076190	GSITISVKNVFMAASRVSGRVWSLVRITIPNDLKSVKIRVEKPQNNSLCPYFQREPL*
Ga0105956_107557	Ga0105956_1075573	F068941	MDNKKFIIGVVLLLLLMLGGTYAYYKWSSSDNMDVNVKIDGGTVTFNGGSNITSTIIPTASKEEGIKKDITVKASKAGVTMNLYMNLTTMPDELKEKSFEYEIYYNSSTLVKKGNFGVYNSNTNTSGIAYATSGVTTLTLFTGRDVSTNSADKYTLYLWFNGKDYTNPNTMQSKKLSFDLYATGENAVLAGN*
Ga0105956_109497	Ga0105956_1094972	F070133	MKRLLGLLLAMMVMMGGMAGAQASTDNVSMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEKIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQ
Ga0105956_111568	Ga0105956_1115681	F102166	MEETWRISPEMRAFLMKKLFSLLLVLALALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEEMVDYITEIANGESADNVFAMWQAVIGAVLFSKRET
Ga0105956_115924	Ga0105956_1159243	F051936	FPLALRGKAFGFSVLQEHAVMTPVISIFFVMLIIRYLSIHISIKK*
Ga0105956_117162	Ga0105956_1171622	F072366	MAVLALQQMVDYVEYVDDLTVLGEPWEVENEYDLYQDFLLDVISWGLQKYRAKKRLLWQICYYVNAWATFYYIFGREITQDNVEQWKKTLFKEAKERYPDSLLFEFIPHAAQLDYVWFYRLTDEQRLQIRLEVGEWNLQKNNMDQAVQSYFDDAMTWYRDNGRKLLEAKNKTNN*
Ga0105956_117624	Ga0105956_1176241	F089005	LTKSKQRSIIALALLRLATSNEGSKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHHELRI*
Ga0105956_126039	Ga0105956_1260391	F073574	RCAIVLNGSEELHIQLCGRLKRGLFGRNQLLADGDVLCVALHQTDDDVPLFDSRCDGYANVLDDRQPPAPIPLHPAICPKCRNAAFQVRLTFEYPEAEEVSAFANPGDAFTWIWISMRCTRCHAVFRGNFAAD*

Scaffold ID

Protein ID

Family

Sequence

Ga0105956_100176

Ga0105956_10017694

F089054

MLTKGKFPVSFEVPGHTKDYPEGFTEEMVIPYRTEELNPYLRYPHQEINKNHLHSEFIRLMLREILQINLSDITIIDIIPLP*

Ga0105956_100579

Ga0105956_10057912

F055775

MAQIAQQDNLVIEVTTTAAALDGDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGAVKAIALN*

Ga0105956_103107

Ga0105956_1031076

F051936

ALRGKAFGFSVLQEHAVMTPVISIFFAILIIRYLSIHISIKK*

Ga0105956_106309

Ga0105956_1063094

F076190

GSITISVKNVFMAASRVSGRVWSLVRITIPNDLKSVKIRVEKPQNNSLCPYFQREPL*

Ga0105956_107557

Ga0105956_1075573

F068941

MDNKKFIIGVVLLLLLMLGGTYAYYKWSSSDNMDVNVKIDGGTVTFNGGSNITSTIIPTASKEEGIKKDITVKASKAGVTMNLYMNLTTMPDELKEKSFEYEIYYNSSTLVKKGNFGVYNSNTNTSGIAYATSGVTTLTLFTGRDVSTNSADKYTLYLWFNGKDYTNPNTMQSKKLSFDLYATGENAVLAGN*

Ga0105956_109497

Ga0105956_1094972

F070133

MKRLLGLLLAMMVMMGGMAGAQASTDNVSMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEKIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQ

Ga0105956_111568

Ga0105956_1115681

F102166

MEETWRISPEMRAFLMKKLFSLLLVLALALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEEMVDYITEIANGESADNVFAMWQAVIGAVLFSKRET

Ga0105956_115924

Ga0105956_1159243

F051936

FPLALRGKAFGFSVLQEHAVMTPVISIFFVMLIIRYLSIHISIKK*

Ga0105956_117162

Ga0105956_1171622

F072366

MAVLALQQMVDYVEYVDDLTVLGEPWEVENEYDLYQDFLLDVISWGLQKYRAKKRLLWQICYYVNAWATFYYIFGREITQDNVEQWKKTLFKEAKERYPDSLLFEFIPHAAQLDYVWFYRLTDEQRLQIRLEVGEWNLQKNNMDQAVQSYFDDAMTWYRDNGRKLLEAKNKTNN*

Ga0105956_117624

Ga0105956_1176241

F089005

LTKSKQRSIIALALLRLATSNEGSKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHHELRI*

Ga0105956_126039

Ga0105956_1260391

F073574

RCAIVLNGSEELHIQLCGRLKRGLFGRNQLLADGDVLCVALHQTDDDVPLFDSRCDGYANVLDDRQPPAPIPLHPAICPKCRNAAFQVRLTFEYPEAEEVSAFANPGDAFTWIWISMRCTRCHAVFRGNFAAD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300008079: Human stool microbial communities from NIH, USA - visit 1, subject 160582958 reassembly

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences