NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008125

3300008125: Human tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 763536994 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008125 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053192 | Ga0114856
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 763536994 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size170045009
Sequencing Scaffolds19
Novel Protein Genes19
Associated Families16

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2795
Not Available4
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip21

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationNational Institutes of Health, USA
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033081Metagenome178Y
F040149Metagenome162N
F043235Metagenome156N
F045567Metagenome152N
F046431Metagenome151Y
F046433Metagenome151N
F073671Metagenome120N
F084362Metagenome112N
F092230Metagenome107N
F095629Metagenome105N
F095633Metagenome105N
F098763Metagenome103N
F099454Metagenome103N
F103433Metagenome101N
F105376Metagenome100N
F105380Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0114856_1000005All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales235426Open in IMG/M
Ga0114856_1000136All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27964181Open in IMG/M
Ga0114856_1000290All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27942944Open in IMG/M
Ga0114856_1000384Not Available36683Open in IMG/M
Ga0114856_1000418Not Available35493Open in IMG/M
Ga0114856_1000468Not Available33002Open in IMG/M
Ga0114856_1000741All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27924597Open in IMG/M
Ga0114856_1001298All Organisms → cellular organisms → Bacteria16881Open in IMG/M
Ga0114856_1001578All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27914844Open in IMG/M
Ga0114856_1002016All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27912575Open in IMG/M
Ga0114856_1002078All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes12257Open in IMG/M
Ga0114856_1003027All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis9049Open in IMG/M
Ga0114856_1010584Not Available2963Open in IMG/M
Ga0114856_1013402All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria2341Open in IMG/M
Ga0114856_1014390All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium2181Open in IMG/M
Ga0114856_1020064All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1539Open in IMG/M
Ga0114856_1028253All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1054Open in IMG/M
Ga0114856_1028769All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1034Open in IMG/M
Ga0114856_1030474All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2973Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0114856_1000005Ga0114856_100000520F095629MRELIICVCLLGCFGIANANNVEQPKEVKIVHNDNSVALHKKIYQLEKRIERLEELLKKEGK*
Ga0114856_1000136Ga0114856_10001366F098763MDRGASLRILSTTLYLATKLFEAVVRTTISYDSSDEVKGKGGMNAIPTAVDE*
Ga0114856_1000290Ga0114856_10002909F040149VADEGAEELRGEVLIEEQGIPVLFVEVEAWYDGRVSSSEILSSVGVALEREPWLAPVWSHDSEDAIHDFIYDTSVPKGHTLTAVRERETVVAQLLNIHRYVYYP*
Ga0114856_1000384Ga0114856_100038458F105376MDKNNEQPEVSAKEFGALQANVEHIKEGVDKHTITLERIENIARANVTQSQLKTYIAEHEKEAEEKYVKRTEIEDVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELKEEVQTQVRSK*
Ga0114856_1000418Ga0114856_100041844F084362MSLMNCTFTVRWSDDKNKPHAKTYATEDDAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDNPSETDAEQKGFWWEK*
Ga0114856_1000468Ga0114856_100046810F105376MNNTNKEVSAKEFGALEADVRHIKEGVDKHTITLERIENIARANVTQAQLKAYIAEHEKESEEKYVKRTEVEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQTVRRK*
Ga0114856_1000741Ga0114856_10007418F045567MRQRDGRDTLTEELEGGITPLLYRAEGEARRPWVGMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*
Ga0114856_1001298Ga0114856_100129813F103433MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRVLFGGITASVFAVMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINIWKQAVPVFAATVVAFFGAYWVNFMSLTDYYGSSDKAANAINARASDRGISGIRSMRAYAVGNFKILRPESYNFINQLVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSAIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE*
Ga0114856_1001578Ga0114856_10015783F043235MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGETAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0114856_1002016Ga0114856_10020162F099454MALTFVLTSCDRLTDEPTLEDRGYYKYFDSTAQHKSFRVVTASGKPYNHKIDWHIIGILDPKSETYLTKKVDTLSNGDLKISYDWVAFIVRENKSVIDVEVQNNETGQDRSVDFVAQDNHKGLASPSMTVIQRAK*
Ga0114856_1002078Ga0114856_10020785F092230MVDKLKTHLLKVFLPLFIVCIILVAFFRQIGCGSDGDYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYNNMAYGEGNVEVSDSTSTGEVQNTEEKEARDKVDDAINSMRHLFASAIMVNLRVVELYKILTVCMILIAIAMTVGYYSYLKPETVYEFYCKLRRKEKYPSD*
Ga0114856_1003027Ga0114856_10030275F033081MHTDITVVYRPKKGVMAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRRKFSILAVGLIIMTIATIKMLLFVPGLNQSVVSLLTRGLETFLPTGWATATAWTVGMSGVFLMGDFTNYTPSQMFLHKIKATRYEVYNIILFLALLEEQAFRSGSERWNWRERVRASVCFGLLHIANIWYSFAAGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL*
Ga0114856_1010584Ga0114856_10105849F073671MNKETEHELAELHEKERSLEKALELVREKIRELVNYTDKNKGQK*
Ga0114856_1013402Ga0114856_10134021F095633MKNYENSTEVGRREGLTEGELRTMGMLAMEATEELKKTTIRKEAVLLGGVPFNSWDEFAKAVQEMAAHKMTAYSYEPIPVKINTKRLIATAFLDDGGEMSVEEHSVPEEVFIDLSRTRCVVDADRSHKSYKFTCPVLKKYPSGELYPIREAYVISAIDVNGSQEVDFKII*
Ga0114856_1014390Ga0114856_10143904F046431MQTLVMAAESELTLTPKPETNNIHLKWTGPQNSSYRVYQKKPGVSSFETIGLTDFSNNAIDEEVKVLNIYPQESNTDGRLWPTLNSSQVANIAKVLPKVQVTYLDGQTETIQKTALLKVWMEGRNSKGRR*
Ga0114856_1020064Ga0114856_10200641F046433MKSRCKTTEYEAINDFVQFIEMTKNYLPDYMEDCAKELIDELAFLGVPELNFAANALAKRLRHHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQFLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIINGSQVEERIAGFEVDNDPEDHEASVLVMAASSNYIDNGIGVDSLWGEATYPVEAYYRLKNDHNDWGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEKIDELSLPALANIVRPYRNGEDFDGLSRFRQLLEKE*
Ga0114856_1028253Ga0114856_10282531F046433SQAQDASRDNLMVYVKADNYLGTETSDPSFMESRCETTEYEAINDFVQFIEMIKHYLPDYMEYCAKELIDELAFLGMPELNFAANALAKRLRHHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKRSKILFLDDWIISGDQVKKRIAGFGVDNDPESHEASVLVMAASSNYIDNGIGADSLWGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSAFGCEVDDIAYRAIEGGILKGERIYRLTLPALVNIVRPYRNGENFDGLSRFRQLLEKG*
Ga0114856_1028769Ga0114856_10287691F046433QAQDASRDNLMVYVKADNYLGTETSDPSFMESRCETTEYEAINDFVQFIETTKHYLPDYMEDCAKELIVELAFLGMPELNFAANALAKRLRYHLEVDNKPVYIDVGNSLSQYRAKNEMKSSQYILSLVLSKFPDDEFEEYEARLKVYGGRGEIDKSSKILFLDDWIVSGDQVKERIAGFEVDNDPESHEASVLVMAASGDYLDNGISAYSQHGGTIYPVEACYVLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEGIGELSLPALANIVRPYRNGENFDGLSRFRQLLERE*
Ga0114856_1030474Ga0114856_10304741F105380EGKMIYKFGAKKILQTAITNGLTITGLASEFKMKHYSFWVPDLYFISYSSFNPNSDLYIAYRSKDAKKICLTNIWSGSGNVDFYSPNGGRLVYNRLCKGRMMDDIGTDDYEAWKRSPVNRASNFVNKFISARGNSDLDFISNPIRSNVANNIKGYAEFLASITKEQENVSTYEEFIEWTKNTNWLK*
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