NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008129

3300008129: Human stool microbial communities from NIH, USA - visit 2, subject 765094712 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008129 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053181 | Ga0114848
Sample NameHuman stool microbial communities from NIH, USA - visit 2, subject 765094712 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size97193873
Sequencing Scaffolds5
Novel Protein Genes5
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lacrimispora → Lacrimispora saccharolytica1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026592Metagenome / Metatranscriptome197Y
F029444Metagenome188Y
F059106Metagenome134N
F076189Metagenome118N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0114848_101574All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales7668Open in IMG/M
Ga0114848_103207All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lacrimispora → Lacrimispora saccharolytica3222Open in IMG/M
Ga0114848_109544All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1277Open in IMG/M
Ga0114848_110524All Organisms → cellular organisms → Bacteria1174Open in IMG/M
Ga0114848_117355All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia741Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0114848_101574Ga0114848_1015749F029444MEFSEQLTGFELEDLMPWTVSNLQRPFRDDFSLEKSGIIAEKESQIFGRRFVGFDS*
Ga0114848_103207Ga0114848_1032075F026592QGIAALAAQGGVATLTERSDATFSVMQFSSADGE*
Ga0114848_109544Ga0114848_1095441F076189LSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSVHFDLRAIQSAQKQLRMLCNFHENTFWLLIFYANYAIL*
Ga0114848_110524Ga0114848_1105241F026592ILCCLRTASPQGIAALAAQGGVATLTERSDETFSVMQFLSADRE*
Ga0114848_117355Ga0114848_1173552F059106KIRVILLQIFVWIVDLKVREHLTEYLKKDIKYHRATTGVHV*
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