NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300008272

3300008272: Human stool microbial communities from NIH, USA - visit 1, subject 158337416 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008272 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052967 | Ga0111092
Sample NameHuman stool microbial communities from NIH, USA - visit 1, subject 158337416 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size215647339
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp. 4_8_47FAA1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales4

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026592Metagenome / Metatranscriptome197Y
F042910Metagenome157N
F044554Metagenome154N
F050794Metagenome145N
F073574Metagenome120N
F076190Metagenome118Y
F077320Metagenome117N
F081354Metagenome114Y
F099269Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0111092_1000059All Organisms → Viruses → Duplodnaviria → Heunggongvirae148922Open in IMG/M
Ga0111092_1002647All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes11886Open in IMG/M
Ga0111092_1007694All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis4105Open in IMG/M
Ga0111092_1008516All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp. 4_8_47FAA3695Open in IMG/M
Ga0111092_1014862All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae2069Open in IMG/M
Ga0111092_1017750All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1723Open in IMG/M
Ga0111092_1025714All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1179Open in IMG/M
Ga0111092_1034823All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes868Open in IMG/M
Ga0111092_1048654All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales624Open in IMG/M
Ga0111092_1050719All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales601Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0111092_1000059Ga0111092_100005914F050794MLYTSNYFVKVRQKQLLDHTYSLSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIEAMMRDLLDELKDDIDLNILIFDVSQLLIKYNLFRLDAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVEMIEDRYSYALYMTEEYG*
Ga0111092_1002647Ga0111092_10026472F081354LVRENQQSSAHNFVKDFSSIYPESRRRSPLKKGAVTEIPLEYGKTEVQIPFEPLQAAISSMELPKNFENKKLPNPLR*
Ga0111092_1007694Ga0111092_10076941F044554FHGGLPPPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLLLSFPFSFRTNFAQALFSSLLFVSDTCAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*
Ga0111092_1008516Ga0111092_10085162F099269VGELLLLDDLGDRASGASVLASATGDAGVLVSDGGDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV*
Ga0111092_1014862Ga0111092_10148621F073574MLLPAAVRPYAADVDGTASRVRCAIALNGSKELHIQLCGRLKRGLFGRNQLLADGDVLCVALHQPDGDVPLFDSRCDGYANVLDGKQPPAPIPLHPAICPKCRNAAFQVRLTFEYPEAEELAADMLGA*
Ga0111092_1017750Ga0111092_10177501F026592RLQTASPQGIDAQASQGSVAPLTERSVETFSVGQFSSADRE*
Ga0111092_1025714Ga0111092_10257143F026592TVCQTRLRTASLQGIAALAAQGGVATLTERSNATFSVKQFLSADRE*
Ga0111092_1034823Ga0111092_10348231F076190KNVFTAASRVSGRVWSLVRITVPNDLKFVRIRVEKPQNNSLYPYFQREPL*
Ga0111092_1048654Ga0111092_10486542F042910LHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITTLTVSAAGKISFQGLTLAPGAAIRIHHDAGVFAAEMVSDESAVSILPYRTPDSADDLLLRPGVMNEIRVEAGSAAFVSGRCKGRYC*
Ga0111092_1050719Ga0111092_10507191F077320MKRKGMHRRRKWVLLAVLLIMVGIAAVWRIWQTPRPTVLHRQDAWLSSAEPEMVGTLPDNAFTAELPEEIDGRLLYIRDYSASGHYQIVWENVSAEAAEVYLTALLDKGFTRLMGTAEDIASGVLLA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.