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Sample 3300008305
3300008305: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159753524 replicate 1 reassembly
Overview
Basic Information
IMG/M Taxon OID 3300008305 Open in IMG/M GOLD Reference Gs0063646 | Gp0053233 | Ga0115183 Sample Name Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159753524 replicate 1 reassembly Sequencing Status Permanent Draft Sequencing Center Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis Published? N Use Policy Open
Dataset Contents
Total Genome Size 63010513 Sequencing Scaffolds 2 Novel Protein Genes 3 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal surface
Location Information
Location National Institutes of Health, USA Coordinates Lat. (o ) N/A Long. (o ) N/A Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F067846 Metagenome 125 Y F073671 Metagenome 120 N F097527 Metagenome 104 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0115183_100074 All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae 41224 Open in IMG/M Ga0115183_108789 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus 1452 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0115183_100074 Ga0115183_10007413 F067846 MSIIAEWERQEFNKWDKQCGKEDDYNRAVEMEIEAIKENIANCDDDVICVFREKMLDYDDVINTFDDDTFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLEQLEKDYRNGYILND* Ga0115183_100074 Ga0115183_1000747 F073671 MEKETEHELAELHEKERSLEKTLELVREKIRELVNYTNKNKGQK* Ga0115183_108789 Ga0115183_1087891 F097527 MIYFKMEKIGNSTYNKEKKTRSENLVFNTIPAAGVEPARP
