NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008534

3300008534: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158802708 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008534 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052937 | Ga0111050
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 158802708 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size77610498
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2791
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F053092Metagenome141N
F064819Metagenome128N
F076191Metagenome118N
F081456Metagenome114N
F081510Metagenome114N
F084342Metagenome112N
F097527Metagenome104N
F103436Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0111050_100063All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes56575Open in IMG/M
Ga0111050_100324All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27921538Open in IMG/M
Ga0111050_103266All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus4041Open in IMG/M
Ga0111050_104136All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes3310Open in IMG/M
Ga0111050_105452All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2585Open in IMG/M
Ga0111050_108303All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1736Open in IMG/M
Ga0111050_110116All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus1435Open in IMG/M
Ga0111050_115095Not Available953Open in IMG/M
Ga0111050_115436All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes930Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0111050_100063Ga0111050_10006347F081510MKLPNMKAIKSAAKHSYTVSKILAKKYAPVALVTTGLVGYGVAVYKGIQSGKKLEATKAKYEAKDEAGEEYTRMDVVKDVAKDVAVPVAIAVASTAAIGLGFAIQTNRLKAVSAALTMVTEEHARYRLRAKEVLDEETFKKIDAPVETKKVEIDGKEVEVESIVPKEGDFYGRWFKYSRHYASDDPDYNEAWVKEVDNMLTQKINTQSGGGMLTFAEVLDTLGFEVPKAALPFGWTDTDGFYLEWDTHEVWNEDKQEHEPQIYVRWQTPRNLYSTTNLRDIIPGRKELA*
Ga0111050_100324Ga0111050_10032410F053092MQSDQGLILCLTHALLVLGTLILEPAEMEDTMDDHTVQLFGVLVAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVVIKEVLIGLQDALITTELVAELADTTVIAGSDLTDPVAKDTLSKARLLDVFVSIVSYKLRFFRHK*
Ga0111050_103266Ga0111050_1032662F103436MITTSKDGFCDKSDAEILNSLKDWVSRCDVDFKREALKKIDSAFALWGARQYVAAVDLLDENEVFLKKSDWPYYALGIQILKVRKHEFFNE*
Ga0111050_104136Ga0111050_1041364F064819MILKDSQGKDRIKFSDIIRLNKEEPVFVKMKVRISTETMVSEENLDIERTDLEDLTRNLKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQEIEKCK*
Ga0111050_105452Ga0111050_1054527F018385AEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYHEEVK*
Ga0111050_108303Ga0111050_1083032F084342LGGYLAIPICRPFFAQALKETLGQERGLGDAYDKDYQNEKALQWVHRRHILSICKEE*
Ga0111050_110116Ga0111050_1101163F097527MIYFKMEKIGNSTYNKEKKTRSENLVFITIPAAGVEPARPCGHWILSSM
Ga0111050_115095Ga0111050_1150951F076191MKIIAENPAEEALLWRIKALSDELVNQDNRSTNMPMWTILDNNKAGKDYGAVMYFTGKAAEQHIKENDHHYDNPMISVRSAHDNRELKDIVHLLILAGGNEIPSNHY*
Ga0111050_115436Ga0111050_1154362F081456LGYRLFLEKGAYMFEEPPIYYILISLIFLIVFGAISFATWMVWLTSIAFFAKLVVTAIGFLLCAMTVILYTISAE*
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