Sample 3300008603

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300008603

3300008603: Planktonic microbial communities from coastal waters of California, USA - Canon-7

Overview

Basic Information
IMG/M Taxon OID	3300008603 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117987 \| Gp0126505 \| Ga0103916
Sample Name	Planktonic microbial communities from coastal waters of California, USA - Canon-7
Sequencing Status	Permanent Draft
Sequencing Center	University of Hawaii
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	139187
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Planktonic Microbial Communities From Coastal Waters Of California, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal water body → coastal sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Pacific Ocean
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F090440	Metagenome / Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0103916_1126	Not Available	525	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103916_1126	Ga0103916_11261	F090440	SLGGNEISGLKLATDLRLKRVYHCRITDVGEDDDLRIIIRKSIGG*

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