Sample 3300008619

Overview

Basic Information
IMG/M Taxon OID	3300008619 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052981 \| Ga0111235
Sample Name	Human stool microbial communities from NIH, USA - visit 1, subject 159369152 reassembly
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	61235788
Sequencing Scaffolds	9
Novel Protein Genes	9
Associated Families	8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F044554	Metagenome	154	N
F047126	Metagenome	150	N
F051936	Metagenome	143	N
F052660	Metagenome	142	N
F067844	Metagenome	125	N
F076189	Metagenome	118	N
F088914	Metagenome	109	N
F088921	Metagenome	109	N

Family

Category

Number of Sequences

3D Structure?

F044554

Metagenome

154

F047126

Metagenome

150

F051936

Metagenome

143

F052660

Metagenome

142

F067844

Metagenome

125

F076189

Metagenome

118

F088914

Metagenome

109

F088921

Metagenome

109

Scaffold	Taxonomy	Length	IMG/M Link
Ga0111235_101546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7289	Open in IMG/M
Ga0111235_102340	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	4509	Open in IMG/M
Ga0111235_105030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1741	Open in IMG/M
Ga0111235_105301	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1636	Open in IMG/M
Ga0111235_105900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1430	Open in IMG/M
Ga0111235_107054	Not Available	1118	Open in IMG/M
Ga0111235_107170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1094	Open in IMG/M
Ga0111235_110426	Not Available	669	Open in IMG/M
Ga0111235_112603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	521	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0111235_101546

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

7289

Open in IMG/M

Ga0111235_102340

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis

4509

Open in IMG/M

Ga0111235_105030

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74

1741

Open in IMG/M

Ga0111235_105301

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales

1636

Open in IMG/M

Ga0111235_105900

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

1430

Open in IMG/M

Ga0111235_107054

Not Available

1118

Open in IMG/M

Ga0111235_107170

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

1094

Open in IMG/M

Ga0111235_110426

Not Available

669

Open in IMG/M

Ga0111235_112603

521

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0111235_101546	Ga0111235_10154610	F067844	MNTLAAEPASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSVGAAVITPQHRSYRVPQGSPQVFGGP*
Ga0111235_102340	Ga0111235_1023406	F051936	PLALRGKAFGFSVLQEHAVMTPVISIAKKVLIIRYLSIHISIKK*
Ga0111235_105030	Ga0111235_1050302	F088921	LGATIRLYKIGAGKNHFFYSEKSKSIVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVTNKLAMIRDKMRSK*
Ga0111235_105301	Ga0111235_1053013	F051936	PLALRGKAFGFSVLQEHAVMTPVISIFFEILIIRYLSIHISIKK*
Ga0111235_105900	Ga0111235_1059002	F076189	PPPSGGGGGVFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLYAIQSAQKQLRMLCNFHENTFGLLIFYTNYAIL*
Ga0111235_107054	Ga0111235_1070541	F044554	AYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLLLSFPFSFRTNFAQALFSSLLFVSDTCAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*
Ga0111235_107170	Ga0111235_1071701	F088914	VWGERFFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGEFIVFSAWYAAKALEMDVK*
Ga0111235_110426	Ga0111235_1104261	F052660	MCILRILPENTPEKIGQERAGTEWTVVKSKISLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDLAHWWPAAAGHSRSADAQPGNEQ
Ga0111235_112603	Ga0111235_1126031	F047126	TRSVLNEKLFVFFGYPKGSLTQNPAALVETDDIFGVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIARFCSQTAAASQSKSAYILSSLESPCILCSLLRNFHILSKKLQKTC*

Scaffold ID

Protein ID

Family

Sequence

Ga0111235_101546

Ga0111235_10154610

F067844

MNTLAAEPASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSVGAAVITPQHRSYRVPQGSPQVFGGP*

Ga0111235_102340

Ga0111235_1023406

F051936

PLALRGKAFGFSVLQEHAVMTPVISIAKKVLIIRYLSIHISIKK*

Ga0111235_105030

Ga0111235_1050302

F088921

LGATIRLYKIGAGKNHFFYSEKSKSIVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVTNKLAMIRDKMRSK*

Ga0111235_105301

Ga0111235_1053013

F051936

PLALRGKAFGFSVLQEHAVMTPVISIFFEILIIRYLSIHISIKK*

Ga0111235_105900

Ga0111235_1059002

F076189

PPPSGGGGGVFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLYAIQSAQKQLRMLCNFHENTFGLLIFYTNYAIL*

Ga0111235_107054

Ga0111235_1070541

F044554

AYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLLLSFPFSFRTNFAQALFSSLLFVSDTCAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*

Ga0111235_107170

Ga0111235_1071701

F088914

VWGERFFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGEFIVFSAWYAAKALEMDVK*

Ga0111235_110426

Ga0111235_1104261

F052660

MCILRILPENTPEKIGQERAGTEWTVVKSKISLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDLAHWWPAAAGHSRSADAQPGNEQ

Ga0111235_112603

Ga0111235_1126031

F047126

TRSVLNEKLFVFFGYPKGSLTQNPAALVETDDIFGVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIARFCSQTAAASQSKSAYILSSLESPCILCSLLRNFHILSKKLQKTC*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300008619: Human stool microbial communities from NIH, USA - visit 1, subject 159369152 reassembly

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences