NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008628

3300008628: Human palatine tonsils microbial communities from NIH, USA - visit 1, subject 763496533 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008628 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052987 | Ga0111366
Sample NameHuman palatine tonsils microbial communities from NIH, USA - visit 1, subject 763496533 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size84641554
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae2
All Organisms → Viruses → Predicted Viral1
Not Available2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Palatine Tonsils → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040685Metagenome161N
F041827Metagenome159Y
F061926Metagenome131N
F077405Metagenome117N
F081454Metagenome114N
F081510Metagenome114N
F097490Metagenome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0111366_101037All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae10598Open in IMG/M
Ga0111366_101415All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae7843Open in IMG/M
Ga0111366_103092All Organisms → Viruses → Predicted Viral3576Open in IMG/M
Ga0111366_103672Not Available3015Open in IMG/M
Ga0111366_104525All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2431Open in IMG/M
Ga0111366_112127All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1011Open in IMG/M
Ga0111366_115551Not Available835Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0111366_101037Ga0111366_1010375F061926MMIKTAKHIKTFLASVLLLIFVMNVSGLFVQLHHQETHQKTEKIAECSNKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEFHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS*
Ga0111366_101415Ga0111366_1014151F040685QTAFIMKKLLFKLFFTLAFASISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWEAFTKKINLDKFKKLRDGPSQQAFDGQDEVIIIKTDKKTYRKMNASGNDHDRKVWYDLLQIIAKEFGKKSIYE*
Ga0111366_103092Ga0111366_1030924F081510EGIKSGKKIEATKAKYEEMDAAGEEYTRMDVVKDVAKDVAIPVAVATASTASIILGFAIQTNRLKAVSSALALVTEEHARYRLRAKTVLDEETFKKVDAPLETKTVNVNGEDIEVESIVPNEGDFYGMWFKHSRKYASDSPEYNEGVIKEADNVFTEKMMRSGMLTFAEVLDTLGFEVPKAALPFGWTDTDGFYIEWDTHEVWNDDKQEYEVQFYVRWKTPRNLYATTSIKDFIPKKTRKELN*
Ga0111366_103672Ga0111366_1036724F081454MKVFKLVLLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMIMNIKYTLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLK
Ga0111366_104525Ga0111366_1045252F097490MELDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQDIEGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMREIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0111366_112127Ga0111366_1121271F041827MKHFLSALALGCLLLSCNRDLENNENNETPAPPKEERLVLASLFEYISNVRFQYKNGNEINRMTINEASIDFEYDTYGRIVKERRFDHKSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGTDTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPPLVVEFYIRPLTYELPFYNDIEHIEDLRFIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVGIHARVHNDPTYDEYLYEISADRSYIKEE*
Ga0111366_115551Ga0111366_1155512F077405PRLLVAKQRGVFYGFISLCQIKFVKKVFDWLKIIQKQKVRLK*
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