NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008688

3300008688: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 861967750 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008688 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053023 | Ga0111559
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 861967750 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size182090879
Sequencing Scaffolds22
Novel Protein Genes23
Associated Families19

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2793
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis1
All Organisms → cellular organisms → Bacteria3
All Organisms → Viruses1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3
Not Available4
All Organisms → Viruses → Predicted Viral1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip21
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F022002Metagenome216Y
F027205Metagenome195N
F043235Metagenome156N
F051211Metagenome144N
F053092Metagenome141N
F053097Metagenome / Metatranscriptome141Y
F063778Metagenome129Y
F070224Metagenome123N
F071329Metagenome122N
F076191Metagenome118N
F077403Metagenome117N
F081456Metagenome114N
F084342Metagenome112N
F089055Metagenome109Y
F092231Metagenome107Y
F101358Metagenome102Y
F103430Metagenome101N
F105380Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0111559_1000006All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279184974Open in IMG/M
Ga0111559_1000044All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis59813Open in IMG/M
Ga0111559_1000085All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27948881Open in IMG/M
Ga0111559_1000129All Organisms → cellular organisms → Bacteria41503Open in IMG/M
Ga0111559_1000145All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 27940464Open in IMG/M
Ga0111559_1000157All Organisms → Viruses39350Open in IMG/M
Ga0111559_1000381All Organisms → cellular organisms → Bacteria25515Open in IMG/M
Ga0111559_1000594All Organisms → cellular organisms → Bacteria20523Open in IMG/M
Ga0111559_1001356All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes13003Open in IMG/M
Ga0111559_1001821All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes10896Open in IMG/M
Ga0111559_1004382Not Available5702Open in IMG/M
Ga0111559_1005512Not Available4776Open in IMG/M
Ga0111559_1006743All Organisms → Viruses → Predicted Viral4060Open in IMG/M
Ga0111559_1008500All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip23364Open in IMG/M
Ga0111559_1010211All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica2900Open in IMG/M
Ga0111559_1010632Not Available2809Open in IMG/M
Ga0111559_1016858All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1920Open in IMG/M
Ga0111559_1024108All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1399Open in IMG/M
Ga0111559_1026402All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1290Open in IMG/M
Ga0111559_1026673All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium1279Open in IMG/M
Ga0111559_1041912All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria852Open in IMG/M
Ga0111559_1064220Not Available578Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0111559_1000006Ga0111559_100000661F053092MQSDQGLILGLTHELLVLRALILEPAEMEDPMDDHTVQLFGILIAKELGIATHRIKADEHIPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTAVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0111559_1000044Ga0111559_10000442F063778MPETISEGAQQQLLQQLKEALGLVADADTSAHDVAAITHSAADGHQLTEVMLQELTTVRQYLKSCADQIEYAISNIKAIPHDPPPDD*
Ga0111559_1000085Ga0111559_100008530F084342LGGYLAIPICRPFFAKALKETLGQERSLGDAYDKDYQNEKALQWIH*
Ga0111559_1000129Ga0111559_10001292F051211MRVKKAIRIFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHILNLRRQRHERHVILRVFINGSTYDIDPSIDIGLAPTLPIAHWDGTSNTATMASLKHLRVYRPHSLHERILSQLRSKLFRGNPKEFYIAIDKWLADTRSHQSP*
Ga0111559_1000145Ga0111559_100014523F043235VDEFGTQLTDALLDRPDRSKRELHQWAVNGDDIVQLRYMDEVVPSDEGHLLIDLCDDDPRSLCSGLGIVTRYPEGAIALFIGLTHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0111559_1000157Ga0111559_100015714F053097MFDIQGSKIKLSTDDLAIPPFKDYYNKAKDKSEALKEIEYVIWLYKWNTPYEAYPEKQRASVVAKDIFKDDKYIPSP*
Ga0111559_1000381Ga0111559_10003815F101358MTEKYSASLPPRQPEHLLTQPITTDGTPKERTTHPDTYIIPKHENVPQYLWNVLRSSGQLDERWIDREIIDKDGTVLVRMTKLVNRSNIHRLEKCVPLAVLQEQNLDFTNAYLQRAYGVMVKDGRLQPVADTTHATTSSQEQQTEILPAQGADTHEHLDGDSARRLVGSVAAKASDGEVDNSLLVRRALKR*
Ga0111559_1000594Ga0111559_100059418F076191MKIIAENPAEEALLWRIKALSDELVNQDNRSTDMPMWTILDNNKAGKDYGAVMYFTGKAAEQHIEENDHHYDNPTTCIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDA*
Ga0111559_1001356Ga0111559_10013566F077403MNTIMLLLRRLVLIILLLPSMCTVYAEDRISVHFEVRWHREHNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEDGSRPEKYNLTYYVPRWATYPLKGAGRSVRERRHYTHHVLLRDQAWEVELEPSIVDGQPKPRIAYGEGMDNWSECACYLQGYLYYLMTPQLDHDWYQVTYLSEHMEYSVGMEMVGTEGTLKPFVHRLAFVPAHSRREYVYSLLAFAVIHGRWQFLLPDWEASGRLRDECIPLNVYQLRGKGSTASAPSGYPLPEHYEGYQLYRGWVRGDSISIKM*
Ga0111559_1001821Ga0111559_100182112F018385MMAENRWDPYAEVPIETHRDPVKDDHLIYGVNVPHFTVTVYSPDGRVNKYWNARILEDMLGYCRIACPRDGKILKFKWSDWSVYMFTHDGLNELVFMPDSGRKIITQLFEKEVK*
Ga0111559_1001821Ga0111559_10018216F027205MRAVKESEEFERKALVEARKRDRAEGKTPREALYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRELADEIEQDLFAFMDYLLDEYDIPRRIKRSAK*
Ga0111559_1004382Ga0111559_10043826F103430MKLITIKAFIGSDNQTKQLNVDTIVSIVNTNHEAFTLQYPVIGYWRGEAEETAVLYLSDERQKVMNTLGELKEVLNQEAIAYQIENDLQLI*
Ga0111559_1005512Ga0111559_10055125F070224MQRLLFLLLTLLHCTAWSQGYNAPDSIYVATGAVYIPPISGEPIYLLASPLRPVKTRGSKIRTRDWVKVDYSYQNNIIIMGFGDSLVIENRFAYYAAGFPGMKEYELYYKGTGEEITKEDFDSIKFSRTPTALREIKKYKLPRTRRSSGEVDRWQHPHLFVIEHDKKAGRYYKYRIALVIYMDYHHPEACIIH*
Ga0111559_1006743Ga0111559_10067436F027205MRAVKESEEFEKKALSEAQKRDRAEGKEPRETLHPNLDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIRK*
Ga0111559_1008500Ga0111559_10085004F105380MEGRQRQYNINLADLDDKISDGIVYADRSGKMIYKFGAKKIIQTAITKDLTITGLDDEFKMDYYSFWVPDIYLISFKSFNPDGGLYLAYHKKDEKHICLTNIWPDSRNQDDTYFPNGKRLETKSICTGRMMDDIDSAEYSAWKNDPVTRASQYINKFINARGNADLDFVNSTLRRKVPNHNTKKFAEFLGSITKEQENVNTYEEFIEWTKTTEWFK*
Ga0111559_1010211Ga0111559_10102114F092231MIIFAPQEFITWTNSLVQFPWPIQVDDFVPYAERLGWKPTPRPTWFNVAPDGDGEVTLISGDREGNVRNLFLRAAANEAKNTTGAAELNDHFVSCVAAGRKAWGEPFLLEAGDGPGVTWRFPGDMFSQVAGGFTAVLFNFFTPEGRRQFL*
Ga0111559_1010632Ga0111559_10106321F022002LTLGLLLALLLSLPSHAQDRRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVHAGSKDASYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGMMIESEGMFKKKSIADAFTSLEVVRTFDYEGHSMSKNAYIAYTDLELDRARSAEKESEI*
Ga0111559_1016858Ga0111559_10168583F071329MLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGIAASAIVAREVELQFDATVKAVEEARDHVEIED*
Ga0111559_1024108Ga0111559_10241083F081456LKEPPIYYILISLIFLIVFGAISFATWLVWLTSIAFFAKLVITAIGFLLCAMTVILYTISAD*
Ga0111559_1026402Ga0111559_10264022F063778LQDTLGLVADADTSAHDVAAITQSAADGHQLTEVMLQQMTAIEAYLKNCQVSINDAIGNIEAIPLEPPPED*
Ga0111559_1026673Ga0111559_10266732F101358MTEKHSASLPSRQEHLLTQPITTDGAPEKRTTHPDAYSIPKRQDVPRHQWNVLRSSGQLDEGWIDEEIITEDGVTLMRMTKLVNRSNIHRLEKCVPLAVLQEQNIDFTNAYLQRAYGVIVKDGRLQPVADATHAASQSSATEQETEVLPAQGDDTYEHLSGDSARQLVGSVAAKASGEVDNSLLVERALERVR*
Ga0111559_1041912Ga0111559_10419122F089055LKVENMNITPECVNQTPEIEAREKLAAIFSDAERRDNNFKVNPELGKTAIDIENTSRMNSADNGAVDLCSQALGSYGKSLDYINNSTLETVQAIGNLLQLFREDKTKESCK*
Ga0111559_1064220Ga0111559_10642201F022002MSRGLSLTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAQARAIIQRQGGKIIRTEGTQAGSDEQAYAVEGLKYARRSTFLVTLHFCKGHLRKIAFVFDKLDVLEQIESELENKYGMMAEGKETSKMKSKFIFDAFTHLEVVRSFKYEGHVGFEYAYISYTDLELDRAYSAEKESEI*
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