NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008692

3300008692: Human stool microbial communities from NIH, USA - visit 2, subject 809635352 SPADES reassembly



Overview

Basic Information
IMG/M Taxon OID3300008692 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052848 | Ga0113555
Sample NameHuman stool microbial communities from NIH, USA - visit 2, subject 809635352 SPADES reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size175694558
Sequencing Scaffolds5
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047126Metagenome150N
F058154Metagenome135N
F077320Metagenome117N
F078004Metagenome117N
F078822Metagenome116N
F080163Metagenome115N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0113555_1000037Not Available63538Open in IMG/M
Ga0113555_1005400All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2588Open in IMG/M
Ga0113555_1012303All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1747Open in IMG/M
Ga0113555_1019136Not Available1464Open in IMG/M
Ga0113555_1069728All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74576Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0113555_1000037Ga0113555_10000372F080163MKTIKFLQESFETKERFQQEISFKYSYNRDIVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDANQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSILIQGFYNRDLSFSTKLESEILDSETELLQEKLDLIREEICKLIGVDPNLEKQGHKDNYVFNLNINSDNQIGFFLQATEL*
Ga0113555_1004350Ga0113555_10043504F078004LSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF*
Ga0113555_1005400Ga0113555_10054001F058154MKSGIWRTYLGLALTAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGTGAFVRVPVPAQSRLRYQPYLLPPEDAPRHDVTLYTLCPLLYGGALAVVFGVLTLLTLGQPVSLVLCELAMGGVVLVMTCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALDVQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGAAIRQVMFRMVDYALPAYAVAMLVTHEAREAEVVRNTLAPVREKMPELDALMKAIEEKAARIES*
Ga0113555_1012303Ga0113555_10123031F047126VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNLAVLVEIDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESSCILCSLLRYFHILSKKLQKTC*
Ga0113555_1019136Ga0113555_10191363F077320MKRKGMHRRRKLVLLAVLLIMVGIAVWRIWQTPRPVVLHRQDAWLSSAEPEMVDVLPDNTFTAELPEKIDGRLLYIRDYSASGHYQIVWEGVSAEAAEVYLNALLDKGFTRLMGTAEDIASGVLLARGDLTLSISLSGGTLNMLNDER*
Ga0113555_1069728Ga0113555_10697281F078822VVLFVKHFFDIFLSFPNAFLKAFHLHAVRFPAAFLLVHRFYLAFEELLSCATAYL*
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