NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008696

3300008696: Planktonic microbial communities from coastal waters of California, USA - Canon-27



Overview

Basic Information
IMG/M Taxon OID3300008696 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117987 | Gp0126516 | Ga0103927
Sample NamePlanktonic microbial communities from coastal waters of California, USA - Canon-27
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Hawaii
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size4752080
Sequencing Scaffolds22
Novel Protein Genes23
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas fluorescens group → Pseudomonas veronii1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas helleri1
Not Available12
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Avibacterium → Avibacterium paragallinarum1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas paralcaligenes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePlanktonic Microbial Communities From Coastal Waters Of California, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → coastal water body → coastal sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationPacific Ocean
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000007Metagenome / Metatranscriptome8691Y
F010914Metagenome / Metatranscriptome297Y
F011139Metagenome / Metatranscriptome294Y
F011936Metagenome / Metatranscriptome285Y
F019483Metagenome / Metatranscriptome229Y
F019998Metagenome / Metatranscriptome226N
F032247Metagenome / Metatranscriptome180Y
F040068Metagenome / Metatranscriptome162N
F042865Metagenome / Metatranscriptome157N
F043390Metagenome / Metatranscriptome156N
F048174Metagenome / Metatranscriptome148Y
F051119Metagenome / Metatranscriptome144N
F054846Metagenome / Metatranscriptome139N
F055725Metagenome / Metatranscriptome138Y
F074867Metagenome / Metatranscriptome119N
F075867Metagenome / Metatranscriptome118N
F076005Metagenome / Metatranscriptome118N
F087089Metagenome / Metatranscriptome110N
F091607Metagenome / Metatranscriptome107N
F101275Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103927_10109All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas fluorescens group → Pseudomonas veronii1784Open in IMG/M
Ga0103927_10295All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas helleri1265Open in IMG/M
Ga0103927_10378Not Available1161Open in IMG/M
Ga0103927_10590Not Available1007Open in IMG/M
Ga0103927_10702All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus955Open in IMG/M
Ga0103927_10706All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae954Open in IMG/M
Ga0103927_10950Not Available866Open in IMG/M
Ga0103927_11069All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae829Open in IMG/M
Ga0103927_11213Not Available795Open in IMG/M
Ga0103927_11642Not Available719Open in IMG/M
Ga0103927_11756All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata703Open in IMG/M
Ga0103927_11818Not Available694Open in IMG/M
Ga0103927_11999All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae671Open in IMG/M
Ga0103927_12017Not Available669Open in IMG/M
Ga0103927_12216Not Available649Open in IMG/M
Ga0103927_12475All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium627Open in IMG/M
Ga0103927_12957All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Avibacterium → Avibacterium paragallinarum590Open in IMG/M
Ga0103927_13078All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas paralcaligenes582Open in IMG/M
Ga0103927_13158Not Available576Open in IMG/M
Ga0103927_13530Not Available553Open in IMG/M
Ga0103927_13731Not Available541Open in IMG/M
Ga0103927_14243Not Available515Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103927_10109Ga0103927_101092F087089LNNAKTIEFIENKANRELIKGIFGDTVLKKFDRVLVDAKRDRLGSTLGGVGGSQTYCRGATDKIMSQSIWKLDGAGASLGALLGTMLGGVGTMGGALGGAATAHAVKVLNMKQNALTSKAMLDPKYAAELLKKQIAPTQYKRGALESLKRNIAPSTIPAQDKN*
Ga0103927_10295Ga0103927_102951F055725MAFFNGCGIDIKTITELAAEGLSLNSMSKVTGHSKDGIKAALDRNNIPYIMGIRERFITVDGVLTSLGDACHAQGFRRESLYAWRDKRRLNEQDGFDAHIIYQQSKRTIDKPILTFKNATVIYKKERYTLNEISDKLKLNRQRFEVFMRQNRYAQNAFERYCYMRG
Ga0103927_10378Ga0103927_103782F040068MARSVPKCKRAAYVYDRDFIVVDDISGVLKMRSECAIDGYGFLSSQGDIRNPQETPPIIREQMAAWPDPRPIGQPVFTPSPDYQYFIFNYFVLSVQSGSTTFDATASVGFNAPIASMAWSVDGVYVVSGLVPVVTMTQGLHDISVLLTDLYGNVHVH*
Ga0103927_10590Ga0103927_105902F048174MSDKGQLNNKDVQSHSNAVTGALNGEIARLKDDLDRLHRERDSFQRQCAVMAEENQQWEQDSKRLTWMIQNYGRVHFEFNANCYVTFIHKNEFKATLGSDDTRLEIDRAMEMCK*
Ga0103927_10702Ga0103927_107021F019998GQKRFDIPTVTNGVPAAYACLETDFRQNSLSVAASAGASSITLTDTVEYIAGDYIGIASDSNGLMWYKVNSVVGQVVNLYEVGTTTAASLDYAASADAIVVGFTTLAWQPLRIIEARRVDLSSDIEVPLMIVGKFDYERIPNKAMTSIPLWLYAQTMIAETQVFVWPPTAYANWAIGYSFERRYQDVDSGINSMDFPPEAYESLRYGLAARLGDEFPIDPQRQAMLEQKAAGYFTAMRQASSGNASVKFGVRG*
Ga0103927_10706Ga0103927_107063F074867MSNRGITDIMLNGEAFELHPTFSNLDKLETVLNKGAIGFLRQDLSSGAFKTGDVVSIIQVCAVPANSRKFPSWWTRDGVGEAVISAGLVGITTSVTHFLAKALTAGTETDIKTVGSESDEKK*
Ga0103927_10950Ga0103927_109502F042865MSLRVPDYETFLAADDFNKRIWWQFMQSVVNDLPLNGNVAPENTVRANKSCLYVESTGGAAVLWFNPNGNGSATGWIVK*
Ga0103927_11069Ga0103927_110692F048174AVLGEIERLKDDLDRLHRERDAFSRQCSVMAEENAMWEQDSKRLTWMIQNYGRVHFEFNANCYVTFIWKNEFKSTLGSDDARVEIDRAMEMCK*
Ga0103927_11213Ga0103927_112132F010914MIYNILVEQNGKFVGSGETVECEFEETQAVIDELQ
Ga0103927_11642Ga0103927_116422F032247MLVWSIIDRVSSVLGQVAAMSPREAINNLETYGRHLGNGFIAINHDRSCELLLKNAVIVLEDARMIQRDAKIGAIKIINRDMPKVDYTTGL*
Ga0103927_11756Ga0103927_117561F011139MGLFLGLLAFLPLVYNLYNTFSKYVATIPMQNSILQTTTFIIFMLSLYCANSMLPCGRYYYEPEGGYVGNP*
Ga0103927_11818Ga0103927_118182F054846INEKMPRRGAEGRGQRRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGFHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQEAKAEKAKEQTATIFGKQRNDPDFFSRDENGRDTPASRGIGRVTTNDFVL*
Ga0103927_11999Ga0103927_119992F051119MTIKEAFEQFDALRVANALGLEYGVVCKWRDRESIPAYWRVKFVNLMNHHNVAIKLHDLAGWIK*
Ga0103927_12017Ga0103927_120171F101275MILSGILGGLGGIPLITDVEPFKYEYRIGLETLVVRTLNQWVLHVGNLYLARTLTLKCLAWGVLLQRLNLNRLAGVCLNGGARGLIQPFT*
Ga0103927_12216Ga0103927_122162F075867MNPALKPSTKHFLQYDAATFEHEGFKTLNGRISQLALEPRFWSVSVKVITESYDGLKKIKDHFNFKTSERCKLSDLRDQVKREVLDKDDYLPVCTQCLVTARVMM*
Ga0103927_12475Ga0103927_124752F043390MIMSYQVKTEDLTKVISLTLTAEQLETIAGALEMYCIGLAEHNDPHLKYAADAQEAIIDVLESNFSVEA*
Ga0103927_12957Ga0103927_129572F011936LEQLHETRLQKLEQGHDMLSRDYSRLNDAIVKISESLMALVVVQEQNKSIMQCMEHQSTTIEKLDARIDAIELQMPQLVESRQWLMIGLGLIVTAVIVALIALVIK*
Ga0103927_13078Ga0103927_130782F091607MSLELQISELNATLKTLNENILLLLGSKEQYSKVECSPIEPVNLGQTEQQTFLPEVAKSDEYTREQLQSLCLEATKRNAANRDIIKAIMLSNFEARKTGDLADNQINLCYSMIAQATKDD
Ga0103927_13158Ga0103927_131581F076005HWYSTRALFFNDEVIMKHFKVRVQYANGIDFLFECDAVTGWQAGALARVAGRLAVMGGSMDVKETIVQEV*
Ga0103927_13530Ga0103927_135301F019483RQGYRRAGCVMANDTGTAEIDFGPFPGSNEASVAVTGQDAIGATSKAESWVMGDDSTTDHTASDHKYLPIFASFTCGNPVTATGFTIYGRSAHKLTGKYALRWVWSD*
Ga0103927_13731Ga0103927_137312F010914MIYNILTEQNGKFVDSGETVDCEFEETQAVIDELQLEHGCC
Ga0103927_14243Ga0103927_142432F076005LRLVLDKGFIFNDEVIMKHFKVRVQYLNGIDFLFECDAGRLAGMGGSMDVKETIVQEA*
Ga0103927_14388Ga0103927_143881F000007ECIGKADKTVSLLQVSSRREDPPPEDQLAKEMTHDLEMNFNKIAPFGKEDTAKELQDHAAKTQDTLVDAVENAEVAEIKRAVFRALTRLRAATIKEFDTIARLETQAIDAYNDAHHYRAENPLSHLHEDEAPVETDKLKSFH*
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