NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008705

3300008705: Human stool microbial communities from NIH, USA - visit 1, subject 763982056 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008705 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053038 | Ga0113869
Sample NameHuman stool microbial communities from NIH, USA - visit 1, subject 763982056 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size175420349
Sequencing Scaffolds7
Novel Protein Genes8
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042095Metagenome159N
F062845Metagenome130N
F064725Metagenome128N
F067845Metagenome125N
F088920Metagenome109Y
F089053Metagenome109Y
F092227Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0113869_1000047All Organisms → Viruses → Duplodnaviria → Heunggongvirae143781Open in IMG/M
Ga0113869_1001261All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii22420Open in IMG/M
Ga0113869_1002218All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii12872Open in IMG/M
Ga0113869_1006763All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3666Open in IMG/M
Ga0113869_1007104All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3459Open in IMG/M
Ga0113869_1009625All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2484Open in IMG/M
Ga0113869_1009929All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2404Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0113869_1000047Ga0113869_100004768F042095MAKTLYKYEASSSKFVWFTTWDRALRNYYTDDYNYVPDPVVGDPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIHYANIQVCKMTSFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLRIHPGPPDMWNYFDINTLPFFEVDKINPNITNFDFLKDWVSGERRTGWNDDNMSGRGLDHLTGFSVYHSNSIRVDKLPDYIYEMRSIIWFVMDCSTHSQKRSDDFVNSFYDLVVGWDQITMASVAKDGERNQFYGLAVSMYSSQYPDENQRPSGTEQVPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE*
Ga0113869_1000047Ga0113869_100004792F064725MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAIMSEAVVKTNNRQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSYEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYAWDNYDITISGNTMYTGFDGFIYIVYRATPKDEDGLPYIPETDLGYLEDYVETYIKMKIFENAAVNGLIQGAGEAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMMSYERMWPNAFDKYVKTV*
Ga0113869_1001261Ga0113869_10012618F092227MKEEKRKRILRVGCLILAGIFALSVLGSVVMMLLV*
Ga0113869_1002218Ga0113869_10022186F089053MEGPRPDKFAFGVRIGRVVDECRPAKGCIRKRIHGSANGQPELSTAEEVNVKNMEAFL*
Ga0113869_1006763Ga0113869_10067633F088920VSANLHHYPAFWAGLILHLILHFSQKAAIFAPKRAVLPIFVPTLFFAGLSVFSPQTSPKISGQTSLYQPWLSPYCLFKD*
Ga0113869_1007104Ga0113869_10071042F092227MNEQKRKRILRVGCLILAGVFLLSVMGSVILMLLV*
Ga0113869_1009625Ga0113869_10096253F067845VNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADNNMSHTDDLNAFLYWSGCYGVPDDVTVALLLDDSAAMTARLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR*
Ga0113869_1009929Ga0113869_10099292F062845MEKTPFILHEKFRSDNNEQRKKQFQKRFEQYIVDELSNTVPSKSCA*
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