NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008730

3300008730: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765560005 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008730 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053054 | Ga0113886
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 765560005 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size145327644
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2791
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
Not Available2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033081Metagenome178Y
F045567Metagenome152N
F046432Metagenome151Y
F046433Metagenome151N
F055792Metagenome138N
F071328Metagenome122N
F092230Metagenome107N
F095633Metagenome105N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0113886_1001618All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis7212Open in IMG/M
Ga0113886_1003095All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 2795030Open in IMG/M
Ga0113886_1009351All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae2530Open in IMG/M
Ga0113886_1039422Not Available820Open in IMG/M
Ga0113886_1040183All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria805Open in IMG/M
Ga0113886_1042492All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria769Open in IMG/M
Ga0113886_1053170All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria632Open in IMG/M
Ga0113886_1059639Not Available571Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0113886_1001618Ga0113886_10016186F033081MHTDMHTDITVVYRPKKGVMAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRRKFCVVAVGLIIMTIATIKMLLFVPGLNQSVVSLLTRGLETFLPTGWATVTAWTVGMAGGVFLMGDFTNYTPSQKILHKIKATRYEVYNIILFLALLEEQAFRSGSEKWNWRERVRASVCFGLLHIANIWYSFAAGIALSATGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL*
Ga0113886_1003095Ga0113886_10030951F045567VCQRDGRDTLTEELEGGITPLFYRAEGEARRPWIRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSDRGYVVERVVR*
Ga0113886_1009351Ga0113886_10093511F092230MRQAHKRMVDKLKTHLLKVFLPLFIVCIILVAFFRQIGCGSDGDYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEAQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTVGYYSYLKPETVYEFYCKLRRKEKYPSDVNLVKRIGFLIIILPPCMLFLLIV*
Ga0113886_1039422Ga0113886_10394221F071328MKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAICLRYSSQLLLKKRRAIRRLGIEKEYVSAILRQYGIHYREYGDNEHRVFFLDRGINLYFSKHDQSSIYI
Ga0113886_1040183Ga0113886_10401831F046432MWEMTENELSEVISKYQMPEGRYLVEQEGSFGESEFFWVIKNQLTNQKYLLMNTYSHHGVEDEVEYYREEGFDNLEAISRKIETLENASDADDEISKYL
Ga0113886_1042492Ga0113886_10424921F046433PDHIKDDARELRNELVFLGMSELHFAATALAKRLRYHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFIDDWIIGGDQVRERISVFGAYNNPGAHKVSVLVMAASSSYINNGIVADSLWGEVTYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSTFGCEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLERE*
Ga0113886_1053170Ga0113886_10531701F095633CGNMGNYENSTEVGRGEGLTEGELRTMGALAVEATEKLRKTTVRKETVLLGSVPFGSWDEFAKAVQEMAAHSYEPIPVEINTKRLIATAFLDDEGEMSVEERFVPEEVFIDLSRTRCDAEEDRNHKSYEFTCPVLKKYPDGKLYPTREAYVISAIDVDANGSQEVDFNIIYGGLN*
Ga0113886_1059639Ga0113886_10596391F055792GEALDSTSAVAHRILLLTTQLGESLLASLRTEDGVIAEAMVTGALERDLAIDCALEEVRPVFVDEGDDGTEAGTTWGRYPLETLQKEGNILFEGSMLPCEACGVDSRSSVKSLDLEPRIIGKAIEAVALPDVTCLDESIPLQGIGGLRDLLVTPDVSETDHLQTSREEGTNLLQLMGIIARKYQLFHTFV
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