NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008797

3300008797: Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample KO-2



Overview

Basic Information
IMG/M Taxon OID3300008797 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117972 | Gp0126353 | Ga0103764
Sample NamePlanktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample KO-2
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Duisburg-Essen
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size83801295
Sequencing Scaffolds8
Novel Protein Genes10
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus3
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Goniodomataceae → Pyrodinium → Pyrodinium bahamense1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePlanktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Eutrophic Pond → Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biome → eutrophic pond → planktonic material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUniversity Duisburg-Essen, Germany
CoordinatesLat. (o)51.46Long. (o)7.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000241Metagenome / Metatranscriptome1481Y
F000577Metagenome / Metatranscriptome1015Y
F014507Metagenome / Metatranscriptome262Y
F022887Metagenome / Metatranscriptome212Y
F031523Metagenome / Metatranscriptome182Y
F041782Metatranscriptome159Y
F061886Metagenome / Metatranscriptome131Y
F080070Metagenome / Metatranscriptome115Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103764_1004183All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea1130Open in IMG/M
Ga0103764_1007721All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae837Open in IMG/M
Ga0103764_1009000All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae772Open in IMG/M
Ga0103764_1010063All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus729Open in IMG/M
Ga0103764_1011885All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea666Open in IMG/M
Ga0103764_1012983All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Goniodomataceae → Pyrodinium → Pyrodinium bahamense637Open in IMG/M
Ga0103764_1013584All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus623Open in IMG/M
Ga0103764_1015171All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus589Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103764_1004183Ga0103764_10041831F000577MVEETEYDDVIECKHSYSERCHTTYTTDFEPQQEEECEENFIKNCFIEYKKVAFDEKIKFCHTPLVCQGEGPEECKTVYESMCETRYHEHDVEDDVVDCETIQDEKCEDVTQGYTTEKKCTKWPRQVCKTEKKQVKKYSPETECKKVPRELCGPSGCVLTPGPEECFDKKETVVQEVPEENCNLEPQRSCKHVTKLVPLLKPQEECVDIPKEVCSRSRTNPRKVQKPVVKKWCYVPTKESGLA*
Ga0103764_1007721Ga0103764_10077211F014507SKDKMLRVEKNNENRSHKTGRLFPTPNKPDPMPQHLAFLFTKITPEQMMYMWRILTLIFVSQCLMVVAYCAALAMFPDYWWTCTLCFGLPFSYIAIQNIYIDHDVMHGATFPPYEWQNYITHPFADFISLPWQEFVLEHNRHHASTVDLLQQGEFGWDPEEFHYALQQWSDKWYCLMLTVPWVPVIHFLGLNDTGALFAMEWWCHFPDEGAGGKCNKEFWTKWVPRRIKHNAFVLSLWACIWLLGTWPLGRPLSEGWRFMLTVSFFARLGFSAAWMFI
Ga0103764_1009000Ga0103764_10090001F041782VTFPPYEWQNYITHPFADFISLPWMDIIMEHNKHHNSTFDLLNHCEFGWDPAEWLYFFQEWTMEWYGWLTVPLIPLWHFVGANDTGCLFACLWWCRFPDAGAGGKCDKQFYKKWLPVRVKHMCFLGCLWGSVWLLGSLGMGRPLSDGWKFVGMVSIFARVGFSAAWMFIANFNHSHLWNEFLAHDPDRTWPKLHRTMAFLLGGRHRWNEMLFHDVHHMCPGRIGAMSQRGRFHGWEKVHDACVEILSRGLWKSDDAE
Ga0103764_1010063Ga0103764_10100631F080070DLTNHAGDAVTIVAQTIASLNQIIGAGKRDANQKDLISTIVTSLGLDSVWSTITALGSSVYLQFINIGTQLLFAGQQVWAQVKPVLAQLVSDLTNHAGDAVTIVAQTIASLNQIIGAGKRDANQKDLISTIVSSLGLGSVWSTITALGSSVSSQFIQIGTQLLFAGSQIWAQVKPVLAQLVSDLTNHAGDAVTIVAQTIASLNQIIGGSGKRDLVSSIVSSLGLDQVWSTITSLGSAVYLQF
Ga0103764_1011885Ga0103764_10118851F022887MATKRSNISKIMEKKLNKWFAMTLDSNNDGLVNWTDFEKAIEAIVPTEDAKKNARLKILRKRVEQNFQKYFWDLCAAGDANGDGNIDLDEWLDVMNEIIKHVKDTNNFPEWYEGLHKSVFRAHEFFDDRNILKTEFADMMATWNVGEAEAEKAFDFITDLGKKKMDYNLFSELMKKFILNETQGHPLNFGLDK*
Ga0103764_1012983Ga0103764_10129832F031523DEINTYIKTKVPEIGARVIKHFTDKYVSARDEVERDVENMKAFYRSQKDIPGKTKADVLKEIWAELPKYSEKPVPPLDEEMLAELAEEPATAEGEFKHSWGTADVLYKSEAIDAFGMKYLLGVFETKAEAQKAFADWNSEYEKARVDMKAEMEQWTKQEQARLDRDTSGQDRIKKVLEEARR*
Ga0103764_1013584Ga0103764_10135841F061886EEKKREEERQKRSKTEMHYLSSAPETSASDNLDRGKFRDHYTNEYVWVEKNHITDVGVKYDGLSRKVDHKPSHWRCEDEIERGKEYKRMNDECADKIADNRYSIAHSRDWLVDDGGVVDRIHRMSAKTLKTRYDLDSIRRNMDNLKAMRTRLLKQ*
Ga0103764_1013868Ga0103764_10138681F000241GPGADVTFKKRPFGILRYQPGQGGKGAMAMEIIPTSRYPGDPQGQAFSSGVKSGWVVKSINGVDVLNEDFGKIMDLLDDEVADPRFSKSTALALEKQGGRLAPAADTPLSISFASIPGYVYKGKELRQDGQDGFH*
Ga0103764_1015171Ga0103764_10151712F061886QSVSAELLNRRQKREEDRQQRAKTEMHYVAHNPDGLSSEVIDRSKFRDHYTNEYVWVERNHITDVGVKYDGLSRKVDHKPSHWRCEDEIERGKEYKRMNDECADKIADNRYSIDNSRDWLVDDGGVVDRVHRMSAKTLKTRYDLDAIKRNMENLKSMRTRLLKN*
Ga0103764_1015931Ga0103764_10159311F000241MAMEIIPKSRYPGDPQGQAFSSGVQSGWVVKSINGQDVLTEDFGKIMDLLDDEVADPRFSKSTALALDKQGGRLVQPADTPLSITYAEVPGYVYKGAALKADGQDGYAR*
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Biomedical Sciences Research Center "Alexander Fleming"
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