NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008801

3300008801: Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NO3-3



Overview

Basic Information
IMG/M Taxon OID3300008801 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117972 | Gp0126357 | Ga0103768
Sample NamePlanktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NO3-3
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Duisburg-Essen
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size61143111
Sequencing Scaffolds5
Novel Protein Genes11
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2
All Organisms → cellular organisms → Eukaryota1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePlanktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Eutrophic Pond → Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biome → eutrophic pond → planktonic material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUniversity Duisburg-Essen, Germany
CoordinatesLat. (o)51.46Long. (o)7.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000044Metagenome / Metatranscriptome3572Y
F000070Metagenome / Metatranscriptome2710N
F000241Metagenome / Metatranscriptome1481Y
F000306Metagenome / Metatranscriptome1332Y
F006424Metagenome / Metatranscriptome373Y
F020307Metagenome / Metatranscriptome224Y
F030134Metagenome / Metatranscriptome186Y
F030772Metagenome / Metatranscriptome184Y
F080070Metagenome / Metatranscriptome115Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103768_1007996Not Available727Open in IMG/M
Ga0103768_1008886All Organisms → cellular organisms → Eukaryota688Open in IMG/M
Ga0103768_1010175Not Available640Open in IMG/M
Ga0103768_1012240All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales579Open in IMG/M
Ga0103768_1015960All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103768_1004696Ga0103768_10046962F000306AYAPAPAYAPAPAYGYEQPKHNCSVQDVTEIADVCTPAFETKCAPVELAIKKIVDKEFCYDVVRTVCTESIEEIPNEVCSFAYQQKEEDTTAKTVEVTFVKEVKVQMVTVCQPGYGGYGGYGGYGASQQYCKEVAQETAFNVPVVTPVDVPVKVAYPEAIRTCVNKPIALPRVACENLTEKKCITVPEIENAVEAVEKCDTQLAAPACQKVELTLPKQVCIELVYGYAEDPAPAYAPAPAYAPVPAYGPVA*
Ga0103768_1006333Ga0103768_10063331F000241GAEPKTANMTRRTLLPLVFAGAAVTYVFSSTMSFVGSFRPSTCRGDLVPARVSAEYLERCGPKDSDVPFDASAATGPGADVTFKKRPFGILRYQPGNGGKGAMAMEIIPTSRYPGDPQGQAMVAGVKSGWVVKSINGVNVLTESFGKIMDLLDDEVADPRFSKSTALALEKQGGRLAPAADTPLSISYASIPGYVYKGKELKQDGQDGFAR*
Ga0103768_1006739Ga0103768_10067391F000241MTRRTLLPVVFAGAALTYVFSTTMSFVGSFRPAHCRGDLVPARVSAEYLERCGPKDSDVPFQSSAVTGPGADVTFKKRPFGILRYQPGQGGKGAMAMEIIPTSRYPGDPQGQAFSSGVKSGWVVKSINGVNVLNEDFGKIMDLLDDEVADPRFSKSTALALEKQGGRLAPAADTPLSISFASIPGYVYKGKELRQDGQDGFH*
Ga0103768_1007996Ga0103768_10079961F080070MKSLLIVLAVCIASTLGAHLNAREVAQKDLISTIVTSLGLDSVWSTITALGSSVYLQFINIGTQLLFAGQQVWAQVKPVLAQLVSDLTNHAGDAVTIVAQTIASLNQIIGGSGKRDLVSSIVSSLGLDQVWSTITSLGSAVYLQFIQIGTQLLFAGQQIWAQVTPVLSQLKDDLINHTGDAVTIVAQSIASLNQILG*
Ga0103768_1008005Ga0103768_10080051F000044PKAARNGRQEVRRGRQGGVAQAGVDFSACQNDPDTGLCCVEKEETVKTIQKDPILECTHKNVEKCHYTYVTQFSPAQEEVCEENFEKTCQITFKQQAFNETVKKCYKPLEKVCNGQGPEQCRTVYESSCTTKYIEKQPGKFVGDTNCEKLPVEICGAGCVTEEGPEECHDKIITSLVDVPEETCDLNPQKTCRFQTKLVPKLKPVAECTTIPQEVCNLKFSQPQEVDKPLKTKWCLDPTPAE
Ga0103768_1008886Ga0103768_10088861F006424VIGSGRVDSVFVGNDFPELGTDLVTALSSLDVNYFSHLF
Ga0103768_1010175Ga0103768_10101751F030134LQTRIPFVLTGFMMYKDKIQPVLQRFKLRSCTFLIVEQTNYICDYNTYEKIIQHRGSSYIYR*
Ga0103768_1012240Ga0103768_10122401F030772NRHHASTVDLLQQGEFGWDPEEFHYALQQWSDKWYCLMLTVPWVPVIHFLGLNDTGALFAMEWWCHFPDEGAGGKCNKEFWTKWVPRRVKHNAFVLSLWACIWLLGTWPLGRPLSEGWRFMFTVSFFARLGFSAAWMFITNFTHSLPWNRFLANDPARTWPLLHDIMALVLGGKHRWNEMLFHDVHHAFPNA
Ga0103768_1014498Ga0103768_10144981F000241AGTGPGAEVEFKKRPFGILRYQPGQGGKGAMVMEVIPKSRYPGDPQGQAFLAGVKGGWVVKAINGQDVQGEAFGKIMDLLDDEVADPRFSKSTAVALQEQGGRLAEASALPVKVTFGTIPGYVYKGKELTADGQDGFAR*
Ga0103768_1014752Ga0103768_10147521F000070ADTEARLKNDIRQKQQEAFEKIGAVEQQAELRSAEASRRLGALDLRMSGVQGGLGEHKRDILKLREEVNGLTVKSASHEVDIQKNSDAARKMEKQRNMDEQNWKAQMDAVHDVLDTKVNEKPFEDLKHCVASLTKGVVKFAQVVGVFPGPKFDDADGADQGEADVELLGWEECA
Ga0103768_1015960Ga0103768_10159601F020307TAHNLFMDMPQGDHKKRAKYRFASKTLMRILPGDLKNEVEGLIAKNTMTLDLYEILGQCTWGQRSL*
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