Basic Information | |
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IMG/M Taxon OID | 3300008810 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117913 | Gp0125703 | Ga0103377 |
Sample Name | Microbial communities from dairy cow rumen, for metatranscriptome studies - 2155_control diet |
Sequencing Status | Permanent Draft |
Sequencing Center | Aarhus University |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 18900503 |
Sequencing Scaffolds | 4 |
Novel Protein Genes | 5 |
Associated Families | 5 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 3 |
All Organisms → cellular organisms → Eukaryota | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Microbial Communities From Dairy Cow Rumen, For Metatranscriptome Studies |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Microbial Communities From Dairy Cow Rumen, For Metatranscriptome Studies |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal proximal gut |
Location Information | ||||||||
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Location | ||||||||
Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006460 | Metagenome / Metatranscriptome | 372 | N |
F008062 | Metagenome / Metatranscriptome | 340 | Y |
F008866 | Metagenome / Metatranscriptome | 326 | Y |
F040462 | Metagenome / Metatranscriptome | 161 | Y |
F096592 | Metagenome / Metatranscriptome | 104 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0103377_100672 | Not Available | 664 | Open in IMG/M |
Ga0103377_100823 | Not Available | 627 | Open in IMG/M |
Ga0103377_100911 | All Organisms → cellular organisms → Eukaryota | 610 | Open in IMG/M |
Ga0103377_101572 | Not Available | 512 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0103377_100467 | Ga0103377_1004671 | F006460 | MEPKRFRISQDGQEYAMAIKLLGERVKIECVDASVPGAPIYCRTYTVDELANESRFFQMVPRSNEAQIELMNVVMSEKIRLYNRGDYMEVTFFLPNGEDLMVQLPRESLKMPMINQNMGQSVQQSVVYDPVTGQSRIQTSVVPGVKRSLYDEVRQRPGFGVPFVDSYGDEGFFETGLPSKFSSVGVVPTPLVGSVPLNSSIGGSNVLVNSGVGGVALTNSGLGVPLANSGIAVNPSIGSNVLANSGVG |
Ga0103377_100672 | Ga0103377_1006721 | F040462 | KMASKTIKLFLSFILFSSIFSLKLQLVDEDYVIVQIGYPSKEYKLIVDPVGPFTYLFKENNSTSKRDGDLASSHDFQNVFGNFSGVWKNDFFYLTEDRLMNFRMDYLEIQKKETKLKCDGVLGLGYSFQNSYGNIYETLEKMYNVFKSKKIFSYDKKKMQITLGEFPERSNYNPTVYKIYEKPEYPGIFLELDKLRFMTDYDQTKYLTEEDLHDDALLTL |
Ga0103377_100823 | Ga0103377_1008231 | F096592 | VKYIISLGYTNKPLTTFVFAYMITCNPLFGNLLGAKLSPKYGGYKDKNSLYFVLAHQILACIAFTPAPYFEEWWKFCIFASFFQVLGMANVGPIGNVITGSLNSEQKKRSAGVLAIFNVIIGSVPAPPIYGLILDRWGEYDKHCAMKAYKNYLYLSVPLICIAIAIRHLRFKNKGEPLIDKEKKDEVEYKEPMQEFVDDFKLKTKDEQP |
Ga0103377_100911 | Ga0103377_1009111 | F008866 | MFKFRQIGDTDEGFSAKVYHKKDMICKRRAHSLIYFNDFIYAISGVDKLEMIKKCEKYDIFNDEWIEIPELNYNRQNAALAIHNQRYLYAFSGYDGFRNVDTFEKLDFLNEEKGWELLELKSTSKDCEEVDVKKNRMGVISLDFDRMLIFGGERNNKEYKDAYIYEFYEKKFYQFADLVRTSNFIMSP |
Ga0103377_101572 | Ga0103377_1015721 | F008062 | VSSFRIREIPVDQIYDAVVALFKGMAETSECKCAAVLTNNKAQILEIVYAAIDEVKAGTPIETAVQNAALKLMGIDGLVSECNVLAMPAIITKITTKDGLVEIFQTLIDNIDEVYSYGEKIKEGIQNKDYNAAAEAFGHIFAIAFDFHVNL* |
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