Sample 3300008846

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300008846

3300008846: Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_2054

Overview

Basic Information
IMG/M Taxon OID	3300008846 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117986 \| Gp0126483 \| Ga0103894
Sample Name	Microbial communities of surface water sampled in Lagrangian time series from North Pacific Subtropical Gyre - BioLINCS_ESP_2054
Sequencing Status	Permanent Draft
Sequencing Center	Massachusetts Institute of Technology
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	5316272
Sequencing Scaffolds	3
Novel Protein Genes	3
Associated Families	2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Microbial Communities Of Surface Water Sampled In Lagrangian Time Series From North Pacific Subtropical Gyre
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Surface Ocean Water → Microbial Communities Of Surface Water Sampled In Lagrangian Time Series From North Pacific Subtropical Gyre

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → surface water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	North Pacific Ocean
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F090440	Metagenome / Metatranscriptome	108	N
F090441	Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0103894_100294	Not Available	641	Open in IMG/M
Ga0103894_100379	Not Available	597	Open in IMG/M
Ga0103894_100676	Not Available	503	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103894_100294	Ga0103894_1002941	F090440	KKKKLQSPRGNEISGLKLATDLRLKRIYHCRVTDVGEDYVLRIIILKSIGG*
Ga0103894_100379	Ga0103894_1003791	F090441	ESEDFIKGEVWELATLSFLDSLALGALITRRVIVGCQFPDAASYRKNDCNTFRSHSGT*
Ga0103894_100676	Ga0103894_1006761	F090441	ESEDFIKGEVWELATLSFLDSLALGALITRRVIVGCQFPDAASYRKNDSDTFRSHSGT*

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