NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008869

3300008869: Microbial communities from dairy cow rumen, for metatranscriptome studies - 6180_control diet



Overview

Basic Information
IMG/M Taxon OID3300008869 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117913 | Gp0125707 | Ga0103381
Sample NameMicrobial communities from dairy cow rumen, for metatranscriptome studies - 6180_control diet
Sequencing StatusPermanent Draft
Sequencing CenterAarhus University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size20860238
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → cellular organisms → Eukaryota2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Dairy Cow Rumen, For Metatranscriptome Studies
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Microbial Communities From Dairy Cow Rumen, For Metatranscriptome Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008062Metagenome / Metatranscriptome340Y
F008855Metagenome / Metatranscriptome327Y
F014928Metagenome / Metatranscriptome259Y
F040462Metagenome / Metatranscriptome161Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103381_1000697Not Available684Open in IMG/M
Ga0103381_1001417All Organisms → cellular organisms → Eukaryota553Open in IMG/M
Ga0103381_1001564Not Available537Open in IMG/M
Ga0103381_1001638All Organisms → cellular organisms → Eukaryota530Open in IMG/M
Ga0103381_1001765Not Available517Open in IMG/M
Ga0103381_1001852Not Available508Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103381_1000697Ga0103381_10006971F040462KMTSKTIKLLLSFALFSSIVSLKLQLVDEDYVIVQIGYPSKEYKLIVDPVGPFTYLFKENNSTSKRDGDLASTHDFQNVFGNFSGVWKNDFFYLTEDRLMNFRMDYLEIQKKETKLKCDGVLGLGYSFQNSYGNIYETLEKMYNVFKSKKIFSYDKKKMQITLGEFPERSNYNPTVYKIYEKPEYPGIFLELDKLRFMTDYDQTKYLTEEDLHDDALLTLLPVVIAP
Ga0103381_1001417Ga0103381_10014171F014928VINKRIQPVIHKEIQPIIHQEIQPVITTEVQPIIQREITPVVHKQIQKIIHQEVQPVIIKRVQQIIHQEITPVVHKEIQPVIQQEIQPVITKEIQPIIQQEIIPVIHKEIQPVINQKIQPVITKEIQPVINKKIQPVIHKLVQPIIHENIQPVITKEIQPVINQKIQPVIHKVVQPIVHENIQ
Ga0103381_1001564Ga0103381_10015641F008855MLKHLSKDYTSNKNSNFNLSFLVDVGKTNWYNGEEKQNEDFLNKDLKEQIPKSQIFEINSLIFNITKHKREILTKYKCFFDEQSNSLSLILTEDICFSDFTKEIMMNLFEFAQKVGIETIYFLVAKKNAQYIRIVQDLMIVGFEVDEKVKTVSIEDKVYKVLMLPVKDQE
Ga0103381_1001638Ga0103381_10016381F014928EVQPVIIKRIQQIIHQEITPVVHKEIQPIIQQEIQPVITTEIQPIIQKEIIPVIHKEIQPIINQKIQPVITKEIQPIITKKIQPVIHKEVQPIIHENIQPIITKEIQPIITQKILPVVHKEIQPIIHKEIQPVVTTQIQPIITKKIQPVIHKEIQPIVHQEIQPVITTEIQPIITQ
Ga0103381_1001765Ga0103381_10017651F008062KFILVLLLAVSCSSFGLREVPVDDIYSAVVALFRGMAETEEATCAGVLENQKDKILEIVYAAIDEVKAGADVSTAAQNALIKLMGVDGLVSECNVLAMPAIITKVTSKDGLVDIFQALIDNIDDVYAYGENIKAAFDEKDYDAAAEAFGHILAIALDFQVNL*
Ga0103381_1001852Ga0103381_10018521F008062TIYAAVVALFKGMAETEEAKCSAVLVNQKEKILEIVHAAIDEVKAGTAVETAIQNAAMKLMGVDGLVSECNVLAMPAIINKFTDKTELVGVFQTLIDNIDEVFAYGENIRDCIKNKDYNGAAENAGHILSIALDFQVNL*
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