Sample 3300009010

Overview

Basic Information
IMG/M Taxon OID	3300009010 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0084162 \| Gp0116214 \| Ga0075519
Sample Name	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB136-I
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	70790116
Sequencing Scaffolds	16
Novel Protein Genes	19
Associated Families	17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
Not Available	5
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Peptococcus → Peptococcus niger	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium GWA2_65_63	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	polar biome → peatland → peat soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	USA: Barrow Environmental Observatory site, Alaska
Coordinates	Lat. (^o)	71.299	Long. (^o)	-156.61	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F017668	Metagenome	239	Y
F021564	Metagenome	218	Y
F048266	Metagenome	148	N
F056711	Metagenome / Metatranscriptome	137	Y
F069483	Metagenome / Metatranscriptome	124	Y
F070687	Metagenome	123	Y
F072481	Metagenome / Metatranscriptome	121	Y
F073875	Metagenome / Metatranscriptome	120	Y
F078013	Metagenome	117	Y
F079367	Metagenome	116	Y
F080207	Metagenome	115	Y
F087945	Metagenome	110	N
F094068	Metagenome / Metatranscriptome	106	Y
F096256	Metagenome	105	N
F096999	Metagenome	104	N
F102122	Metagenome	102	N
F104110	Metagenome / Metatranscriptome	101	N

Family

Category

Number of Sequences

3D Structure?

F017668

Metagenome

239

F021564

Metagenome

218

F048266

Metagenome

148

F056711

Metagenome / Metatranscriptome

137

F069483

Metagenome / Metatranscriptome

124

F070687

Metagenome

123

F072481

Metagenome / Metatranscriptome

121

F073875

Metagenome / Metatranscriptome

120

F078013

Metagenome

117

F079367

Metagenome

116

F080207

Metagenome

115

F087945

Metagenome

110

F094068

Metagenome / Metatranscriptome

106

F096256

Metagenome

105

F096999

Metagenome

104

F102122

Metagenome

102

F104110

Metagenome / Metatranscriptome

101

Scaffold	Taxonomy	Length	IMG/M Link
Ga0075519_1000096	All Organisms → cellular organisms → Archaea → Euryarchaeota	7736	Open in IMG/M
Ga0075519_1000684	Not Available	3208	Open in IMG/M
Ga0075519_1002975	Not Available	1699	Open in IMG/M
Ga0075519_1004791	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina	1389	Open in IMG/M
Ga0075519_1010413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Peptococcus → Peptococcus niger	997	Open in IMG/M
Ga0075519_1011609	Not Available	955	Open in IMG/M
Ga0075519_1011950	All Organisms → cellular organisms → Archaea	943	Open in IMG/M
Ga0075519_1013152	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	905	Open in IMG/M
Ga0075519_1014619	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium GWA2_65_63	865	Open in IMG/M
Ga0075519_1026457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	666	Open in IMG/M
Ga0075519_1035014	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	589	Open in IMG/M
Ga0075519_1036828	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	577	Open in IMG/M
Ga0075519_1037348	Not Available	573	Open in IMG/M
Ga0075519_1038634	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	565	Open in IMG/M
Ga0075519_1040165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	556	Open in IMG/M
Ga0075519_1046848	Not Available	520	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0075519_1000096

All Organisms → cellular organisms → Archaea → Euryarchaeota

7736

Open in IMG/M

Ga0075519_1000684

Not Available

3208

Open in IMG/M

Ga0075519_1002975

Not Available

1699

Open in IMG/M

Ga0075519_1004791

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina

1389

Open in IMG/M

Ga0075519_1010413

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Peptococcus → Peptococcus niger

997

Open in IMG/M

Ga0075519_1011609

Not Available

955

Open in IMG/M

Ga0075519_1011950

All Organisms → cellular organisms → Archaea

943

Open in IMG/M

Ga0075519_1013152

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium

905

Open in IMG/M

Ga0075519_1014619

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium GWA2_65_63

865

Open in IMG/M

Ga0075519_1026457

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

666

Open in IMG/M

Ga0075519_1035014

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

589

Open in IMG/M

Ga0075519_1036828

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

577

Open in IMG/M

Ga0075519_1037348

Not Available

573

Open in IMG/M

Ga0075519_1038634

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

565

Open in IMG/M

Ga0075519_1040165

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

556

Open in IMG/M

Ga0075519_1046848

Not Available

520

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0075519_1000096	Ga0075519_10000963	F080207	MTTRKTSVVIALCFVLIGTLTATKAVTAASTDDSAFRRFDIAIGDYKYGELTIDPATDQFFAIANVGKGSADECVTLVAQKDGTSPQHISIAHSTVSTEGRVHWEGPLTTAQLDWINSYGYAAVFFARGAN*
Ga0075519_1000684	Ga0075519_10006845	F096256	MTSRKLLAVLAAAIVATVLTSGCLSSLTSRSSPTATPQNLSVSYDASFVLSGWHAISKFTQVTPKTYVGTYADEKGQSWNFTVQLFSAENTSYGRYFELMKKKSDEGYVKTNESKIALGTGQTVFGRIDERWYGYKASDSENPALYALLFGYDENAASWVVATVASGAIITTKTTTALS*
Ga0075519_1002975	Ga0075519_10029754	F079367	AKIKKMLTRGDVADDKFQHKDDIAWWMGRYETLITTEADAVVRKAMAKLNEAVALREEGINLVEQLDRDIIEAEHEVKRLGGDAFIENSEPMIKELKVYFDNLYESLKRPQPEEVEK*
Ga0075519_1004249	Ga0075519_10042491	F104110	DPNIRYYFTQEDVLTSNERVVARSVGEFTDDTAKRSHFLCALYGVEVRDATNKRVGVLDNFVASPEGALVVIEDAKGNALVGRYRDLDLTRLSKFAILKQLPAQDSFDEYLKDINRDAFLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID*
Ga0075519_1004791	Ga0075519_10047913	F080207	ITMRKTSIGVALCLVLIGTLTAITGVTAAPTDDSAIQRFDIAMGDYKYGKLTVDTETDQFVANAHVGKQSADEQVTLVARKDGASPHYVVIARSTVNDGGRVHWGGTLTEAQLDWIHSYGYGAVFFVRGNY*
Ga0075519_1010413	Ga0075519_10104131	F048266	MTIMAFAGGLLGLGNYVWDGWTMASGERNLYVPSNIVSVLLLVIAGSVAATMLLRDHGRMIEEERKEYRATLALSIAALVILSSWILFRAITTA*
Ga0075519_1011609	Ga0075519_10116092	F094068	MKKRKMQIWVLVSGMALVIGASIAVSVPPEVSAGTPCCSITAIDVKTGIVTAKNAETGKTFEFRLGNAAQIGNIKIGDQVSTDFQTREVTVHSFQPVDGILMIKPMPPPPIRKR*
Ga0075519_1011950	Ga0075519_10119503	F072481	MIPGSKQCDDMVARKNETKPPFRPDSESEKQVRCNHCGETYREKEIKWDTIREMWVCKNHPHCDGSVLNLDIRHIDY*
Ga0075519_1013152	Ga0075519_10131521	F056711	GDTIPLPFFDVPLRMRMKKLITVLAAAVFALSFMAGGCAKEKSSPQPQPAKMETPGTAKTAASKPKPRVRLFTGTVEALDEEAGTLVLKGPKGERRFQAQDQVKEQLDDLNIGEKVIVKHVDEIALSIVKPRTGKSALVWMEKTVPESEPAGS*
Ga0075519_1014189	Ga0075519_10141892	F104110	DPNIRYYFTQEDVLTSNERVVARSVGEFTDDTAKRSHFLCALYGVEVRDTTNKRVGVLDNFVAGPEGALVVIEDAKGNALVGRYRDLDLTRLSKFATLKQLPAQDSFDQYLKGMNKDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID*
Ga0075519_1014619	Ga0075519_10146192	F021564	KSFVREGNAMEKKMTITVEIDGDRKEIVVRDSAGNTRHLKSVLVTGGGFEEGSLYLFGWGSCADLGWALAEGFRFSSVSPRSTDAFYQRVFAHLTRWIARFQGWALDQPMDPRLLLERWEAEDAAKSAEEAYGKNTN*
Ga0075519_1026457	Ga0075519_10264571	F073875	LAMRTEETIAAEKMRRKRIVAILGNCQDCGQPVIAGQEFLQSDNGIQHALCFYDPAYAKRVRELRPNTGQ*
Ga0075519_1029279	Ga0075519_10292791	F096999	VVQEQYVEPGRGRMLYPAAPIVGAVAGAAGVLVIISTFFSWISGSGVTGWSMMFRSGFGTSQNFLFSTGGSRIVFSGFWSLLFGVLIVAGAVTLITGWGGANGLVLTAGILGLIISVLSIVMLYTLKLQSLTPGAGLWMF
Ga0075519_1035014	Ga0075519_10350141	F087945	MGGVPAEIIGDRTADQPCDGWNPSDHPEFREFLDHVAEILAHEYVQRMRNTADPKDIEAWEKGGQ*
Ga0075519_1036828	Ga0075519_10368281	F069483	RWTVKHGIPRSRAVHAESHDLAIFSITETELMEKWRVPSERIRTASEIPIEVDLTDKDAIPVYMRISDKVLHLHRLGMTYTNIAERLGINPWMAKKAARWGNIQKA*
Ga0075519_1037348	Ga0075519_10373481	F078013	TERDDCNIDNIDEYHAMRDEALTNVKAPPPSEYDIAQFEEAFADNDGEYDYDGSERNAKQRALIWYSDTLYSASELSVIMPKVVPHYKEFDGVKTIQLLTGMYPEAYFLPSREYGVAIFVYPPNGTTALKKPNKIEMERLKADSYTIHVILREDKLIHVIELWFDAAKKL*
Ga0075519_1038634	Ga0075519_10386341	F017668	MNKGRLYEELIPNEQLSYKGYNTPELANARIKQILDEVKKEMPPFAEKWVNTENENPDWKATCEAMNERTLAREKWFLKWFGE*
Ga0075519_1040165	Ga0075519_10401652	F070687	MTVASLAWIAYKTGWYFYALGPQLVICMLLGYFAARKTAGDLLNWLVIGFFAALVPLAGILIMLGLWWHAG
Ga0075519_1046848	Ga0075519_10468481	F102122	MVRAKGRNHPYLELEGEALDNHMMAMHGWSMQMVAVKGTQTLAQKYNYIGEMHRREHHLPPHAVPVDED*

Scaffold ID

Protein ID

Family

Sequence

Ga0075519_1000096

Ga0075519_10000963

F080207

MTTRKTSVVIALCFVLIGTLTATKAVTAASTDDSAFRRFDIAIGDYKYGELTIDPATDQFFAIANVGKGSADECVTLVAQKDGTSPQHISIAHSTVSTEGRVHWEGPLTTAQLDWINSYGYAAVFFARGAN*

Ga0075519_1000684

Ga0075519_10006845

F096256

MTSRKLLAVLAAAIVATVLTSGCLSSLTSRSSPTATPQNLSVSYDASFVLSGWHAISKFTQVTPKTYVGTYADEKGQSWNFTVQLFSAENTSYGRYFELMKKKSDEGYVKTNESKIALGTGQTVFGRIDERWYGYKASDSENPALYALLFGYDENAASWVVATVASGAIITTKTTTALS*

Ga0075519_1002975

Ga0075519_10029754

F079367

AKIKKMLTRGDVADDKFQHKDDIAWWMGRYETLITTEADAVVRKAMAKLNEAVALREEGINLVEQLDRDIIEAEHEVKRLGGDAFIENSEPMIKELKVYFDNLYESLKRPQPEEVEK*

Ga0075519_1004249

Ga0075519_10042491

F104110

DPNIRYYFTQEDVLTSNERVVARSVGEFTDDTAKRSHFLCALYGVEVRDATNKRVGVLDNFVASPEGALVVIEDAKGNALVGRYRDLDLTRLSKFAILKQLPAQDSFDEYLKDINRDAFLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID*

Ga0075519_1004791

Ga0075519_10047913

F080207

ITMRKTSIGVALCLVLIGTLTAITGVTAAPTDDSAIQRFDIAMGDYKYGKLTVDTETDQFVANAHVGKQSADEQVTLVARKDGASPHYVVIARSTVNDGGRVHWGGTLTEAQLDWIHSYGYGAVFFVRGNY*

Ga0075519_1010413

Ga0075519_10104131

F048266

MTIMAFAGGLLGLGNYVWDGWTMASGERNLYVPSNIVSVLLLVIAGSVAATMLLRDHGRMIEEERKEYRATLALSIAALVILSSWILFRAITTA*

Ga0075519_1011609

Ga0075519_10116092

F094068

MKKRKMQIWVLVSGMALVIGASIAVSVPPEVSAGTPCCSITAIDVKTGIVTAKNAETGKTFEFRLGNAAQIGNIKIGDQVSTDFQTREVTVHSFQPVDGILMIKPMPPPPIRKR*

Ga0075519_1011950

Ga0075519_10119503

F072481

MIPGSKQCDDMVARKNETKPPFRPDSESEKQVRCNHCGETYREKEIKWDTIREMWVCKNHPHCDGSVLNLDIRHIDY*

Ga0075519_1013152

Ga0075519_10131521

F056711

GDTIPLPFFDVPLRMRMKKLITVLAAAVFALSFMAGGCAKEKSSPQPQPAKMETPGTAKTAASKPKPRVRLFTGTVEALDEEAGTLVLKGPKGERRFQAQDQVKEQLDDLNIGEKVIVKHVDEIALSIVKPRTGKSALVWMEKTVPESEPAGS*

Ga0075519_1014189

Ga0075519_10141892

F104110

DPNIRYYFTQEDVLTSNERVVARSVGEFTDDTAKRSHFLCALYGVEVRDTTNKRVGVLDNFVAGPEGALVVIEDAKGNALVGRYRDLDLTRLSKFATLKQLPAQDSFDQYLKGMNKDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID*

Ga0075519_1014619

Ga0075519_10146192

F021564

KSFVREGNAMEKKMTITVEIDGDRKEIVVRDSAGNTRHLKSVLVTGGGFEEGSLYLFGWGSCADLGWALAEGFRFSSVSPRSTDAFYQRVFAHLTRWIARFQGWALDQPMDPRLLLERWEAEDAAKSAEEAYGKNTN*

Ga0075519_1026457

Ga0075519_10264571

F073875

LAMRTEETIAAEKMRRKRIVAILGNCQDCGQPVIAGQEFLQSDNGIQHALCFYDPAYAKRVRELRPNTGQ*

Ga0075519_1029279

Ga0075519_10292791

F096999

VVQEQYVEPGRGRMLYPAAPIVGAVAGAAGVLVIISTFFSWISGSGVTGWSMMFRSGFGTSQNFLFSTGGSRIVFSGFWSLLFGVLIVAGAVTLITGWGGANGLVLTAGILGLIISVLSIVMLYTLKLQSLTPGAGLWMF

Ga0075519_1035014

Ga0075519_10350141

F087945

MGGVPAEIIGDRTADQPCDGWNPSDHPEFREFLDHVAEILAHEYVQRMRNTADPKDIEAWEKGGQ*

Ga0075519_1036828

Ga0075519_10368281

F069483

RWTVKHGIPRSRAVHAESHDLAIFSITETELMEKWRVPSERIRTASEIPIEVDLTDKDAIPVYMRISDKVLHLHRLGMTYTNIAERLGINPWMAKKAARWGNIQKA*

Ga0075519_1037348

Ga0075519_10373481

F078013

TERDDCNIDNIDEYHAMRDEALTNVKAPPPSEYDIAQFEEAFADNDGEYDYDGSERNAKQRALIWYSDTLYSASELSVIMPKVVPHYKEFDGVKTIQLLTGMYPEAYFLPSREYGVAIFVYPPNGTTALKKPNKIEMERLKADSYTIHVILREDKLIHVIELWFDAAKKL*

Ga0075519_1038634

Ga0075519_10386341

F017668

MNKGRLYEELIPNEQLSYKGYNTPELANARIKQILDEVKKEMPPFAEKWVNTENENPDWKATCEAMNERTLAREKWFLKWFGE*

Ga0075519_1040165

Ga0075519_10401652

F070687

MTVASLAWIAYKTGWYFYALGPQLVICMLLGYFAARKTAGDLLNWLVIGFFAALVPLAGILIMLGLWWHAG

Ga0075519_1046848

Ga0075519_10468481

F102122

MVRAKGRNHPYLELEGEALDNHMMAMHGWSMQMVAVKGTQTLAQKYNYIGEMHRREHHLPPHAVPVDED*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009010: Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB136-I

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences