NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009070

3300009070: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_1000_biof (version 2)



Overview

Basic Information
IMG/M Taxon OID3300009070 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118793 | Gp0095089 | Ga0066256
Sample NameWastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_1000_biof (version 2)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size473466628
Sequencing Scaffolds16
Novel Protein Genes18
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → unclassified Candidatus Altiarchaeales → Candidatus Altiarchaeales archaeon HGW-Altiarchaeales-21
Not Available9
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense1
All Organisms → Viruses → environmental samples → uncultured archaeal virus1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameWastewater Bioreactor Microbial Communities From Cape Town, South Africa
TypeEngineered
TaxonomyEngineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationCape Town, South Africa
CoordinatesLat. (o)-33.927Long. (o)18.452665Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004515Metagenome434Y
F007322Metagenome353Y
F013535Metagenome / Metatranscriptome270Y
F014281Metagenome / Metatranscriptome264Y
F016496Metagenome / Metatranscriptome246N
F019951Metagenome / Metatranscriptome226N
F025775Metagenome200Y
F026802Metagenome / Metatranscriptome196N
F036087Metagenome170N
F053823Metagenome / Metatranscriptome140Y
F060596Metagenome / Metatranscriptome132N
F069722Metagenome / Metatranscriptome123Y
F069970Metagenome123Y
F075683Metagenome118N
F075684Metagenome / Metatranscriptome118Y
F088268Metagenome109N
F093254Metagenome106Y
F096615Metagenome / Metatranscriptome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0066256_1000626All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus78548Open in IMG/M
Ga0066256_1002017All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria24150Open in IMG/M
Ga0066256_1002667All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes19064Open in IMG/M
Ga0066256_1005525All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea10405Open in IMG/M
Ga0066256_1028557All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → unclassified Candidatus Altiarchaeales → Candidatus Altiarchaeales archaeon HGW-Altiarchaeales-22181Open in IMG/M
Ga0066256_1042651Not Available1436Open in IMG/M
Ga0066256_1045756Not Available1338Open in IMG/M
Ga0066256_1049205All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense1250Open in IMG/M
Ga0066256_1059050Not Available1060Open in IMG/M
Ga0066256_1069564Not Available886Open in IMG/M
Ga0066256_1076033Not Available732Open in IMG/M
Ga0066256_1076037Not Available732Open in IMG/M
Ga0066256_1076649Not Available717Open in IMG/M
Ga0066256_1078480Not Available677Open in IMG/M
Ga0066256_1078582Not Available675Open in IMG/M
Ga0066256_1086054All Organisms → Viruses → environmental samples → uncultured archaeal virus587Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0066256_1000608Ga0066256_100060830F014281MAGMKIYLLMLLIGALFTAIHFTSIPDAGSKSLPQ*
Ga0066256_1000626Ga0066256_100062621F025775MKHLLTFQGFPMVVVIALIVWSWFSILSVIVAKLF*
Ga0066256_1002017Ga0066256_100201717F013535MTFEFSLLIVYRLLAFGVAAAMVWVVLRDRDWRSQVFAAMVMIPFALRAAGLK*
Ga0066256_1002667Ga0066256_100266717F069970MTTQLNKTLQVGDRVTFDNDQIELFKAETSSTDKAVRQYQQLVLGGIDQVGIVKELGGNLTTVSYPDGWDLPVPTKYLIVLPSE*
Ga0066256_1005525Ga0066256_10055253F053823MFTINPLDHNTKGAIDIIINSKSRIKKIIQKIKNRKETGNTLTLKESKPHSNPSDLIIFDLTNKLPTPITKGITKEINK*
Ga0066256_1028557Ga0066256_10285572F016496MEDKIKRHRGFFKKGNKYQQKGRAGLRYGGTTPVAKDKEKNLERLRSGWKPKTLICTNITISDDEEAFANEFSKKVSEENDTYVDTFLIELAIAQILQVHRVYVYAKEKKISRDASRMIGTVLSTLREMNATKNARKEDNIKVTVNSDIMTLIQQNLNLISNDESKKGNNIDKK*
Ga0066256_1042651Ga0066256_10426512F036087MSSTTTRTLYDPNTHPVAAAYVDANAAERHAARETWLASDEERGYRFAVYRTVGLRHCDSVPRRRESPHLCRPSELRHRVYLWVRAIAAELEPQTATYWLVCHAYPVHPRTGRSDHGLLAEYILAVHPEAPLCIGYMAHDWVVDPSAHAGRAPGDRRSLLVCLRCGKRHEYREQADPQAPWPWQSYGMEWDPELAWPT*
Ga0066256_1045756Ga0066256_10457563F069722LSAELDPKAKKGRPDLETGAAHAKALGHRRGAALQE*
Ga0066256_1049205Ga0066256_10492054F060596MENKEARVGAIPISDENIKKSEVAKKKMAKNRTMVLLDRKIVNRLCCCKNKIGNTYNSVIGNLLDEYENKINKDGQ*
Ga0066256_1059050Ga0066256_10590502F088268MPTSAEIVEYLASEGLLDIQPWRDAGALSAMDPLTLSQFCAGLDESMESIAANLRWRRARFGIPTEDL*
Ga0066256_1059050Ga0066256_10590504F093254RRAIMSDTSYRKMMAALRERTEGDFTLLSQDAADALSLARWREYPNWAKEEPIVESAVPEIIYDAIHGDGTAASCSYETLRRAALDYLEIVTRDDWNCP*
Ga0066256_1069564Ga0066256_10695641F096615MLQRVTASANRQHPNFKENEMAGWFGNNPEDRARERELNNYLDAADRLDNAERITELALDKFNALPSFYSPKDARYRYTFMDDAMDSLKQEELIAIARLLRDGEHLQAGKLLEASLMRVLVAEAEEEIEDEEND*
Ga0066256_1076033Ga0066256_10760331F075684MDIASPPKTDAEQKKKAKKIDNFQREIEKRWIEVRADKEEIRTTMTILYERSKIRIKYMGVAEEEQMSWADIRRDIENQMKNSFCM*
Ga0066256_1076037Ga0066256_10760372F075683MVSIYTTHMQPATGWIDQCGEVEIRGGFDAGEMIRCVCCDKKRPAEDCVVQCYYDGMSVWCAEGKGCKSRAEIEQKRLIAHENRSRGQRARRAKERLLLAAVVPLD*
Ga0066256_1076649Ga0066256_10766492F026802MDYLLPFSRNLTQGNTEEIAAADPGHLVGVFLWFKSGSQGFHPLHGQISISNIGTTKEYLLKNGIYAIFQRGTDGFMLNDWYQPAFIPLDHDIRANHQVLLETFTWGANFISVRGHFVYSK*
Ga0066256_1078480Ga0066256_10784801F004515QIEAWGIKNMVQTIRSETLLPGQKMILLEKPLVLNRIFFSIRALADQSAWYQSKVSFDDPLFSSFYVLNGPGKYFEARGEGIFQGDIWVTNASDQNLQYTVTEILI*
Ga0066256_1078582Ga0066256_10785822F007322RPRLYSIIVRVDDEDAIMIVIDRKAIGVVELAWFLAFLAELGHERAIVTREYLHSMVVAIDDEQETSMMVEHQAIRAVELAIGIACLLGANRELDSSITIKSIVSHLFHFNLSHTTTKR*
Ga0066256_1086054Ga0066256_10860541F019951MTILFKEFRINVSGNNVKCKANNKLYVQKGQKIILHAIQIAPGASTADEDVFIMLYRDQEQLAGEGIYHAIIDDYTHTIEFDADAVEGQTFVTKAWGPN
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