Sample 3300009348

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300009348

3300009348: Microbial communities of thrombolites from Highborne Cay, Bahamas - Zone2_total_RNA

Overview

Basic Information
IMG/M Taxon OID	3300009348 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117975 \| Gp0126375 \| Ga0103786
Sample Name	Microbial communities of thrombolites from Highborne Cay, Bahamas - Zone2_total_RNA
Sequencing Status	Permanent Draft
Sequencing Center	University of Florida
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	47559849
Sequencing Scaffolds	11
Novel Protein Genes	12
Associated Families	7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
Not Available	5
All Organisms → cellular organisms → Eukaryota	2
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Microbial Communities Of Thrombolites From Highborne Cay, Bahamas
Type	Environmental
Taxonomy	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Microbial Mats → Microbial Mats → Microbial Communities Of Thrombolites From Highborne Cay, Bahamas

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → cay → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Surface (saline)

Location Information
Location	Highborne Cay, Bahamas
Coordinates	Lat. (^o)	24.72	Long. (^o)	-76.82	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001679	Metagenome / Metatranscriptome	653	Y
F003495	Metagenome / Metatranscriptome	483	Y
F008361	Metagenome / Metatranscriptome	334	Y
F030135	Metagenome / Metatranscriptome	186	Y
F037503	Metagenome / Metatranscriptome	168	Y
F047147	Metagenome / Metatranscriptome	150	Y
F060086	Metagenome / Metatranscriptome	133	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0103786_1002964	All Organisms → cellular organisms → Bacteria	1170	Open in IMG/M
Ga0103786_1002965	All Organisms → cellular organisms → Bacteria	1170	Open in IMG/M
Ga0103786_1003772	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1051	Open in IMG/M
Ga0103786_1005740	Not Available	857	Open in IMG/M
Ga0103786_1007140	Not Available	771	Open in IMG/M
Ga0103786_1007351	Not Available	759	Open in IMG/M
Ga0103786_1007822	All Organisms → cellular organisms → Eukaryota	735	Open in IMG/M
Ga0103786_1012950	Not Available	566	Open in IMG/M
Ga0103786_1014098	All Organisms → cellular organisms → Eukaryota	543	Open in IMG/M
Ga0103786_1015383	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	521	Open in IMG/M
Ga0103786_1015623	Not Available	516	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103786_1002698	Ga0103786_10026981	F047147	VKLYPSIKYTIIVAVTEGLVREEQLLHDMCLLGAVTVEITQILTRAGIYIGLKYI*
Ga0103786_1002964	Ga0103786_10029642	F001679	VWGMSRRQKAMKGVEDCDKPRGLVKRELIRGCLNDMH*
Ga0103786_1002965	Ga0103786_10029652	F001679	VWGMSRRQKAMKGVEDCDKPRGLVKRELIRGCLNDM*
Ga0103786_1003772	Ga0103786_10037722	F003495	MKENNEKKIKNGEEISKLTKAPPKDTAALDKRSVLAKVNSQGSGR*
Ga0103786_1005740	Ga0103786_10057401	F047147	AVTEGLVREEQLLHDMCLLGAVTVEITQILTRAGIYYD*
Ga0103786_1007140	Ga0103786_10071401	F047147	EGLVREEQLLHDMCLLGAVTVEITQILTRAGIYIGLKYI*
Ga0103786_1007351	Ga0103786_10073511	F030135	PRIAPEGLKDREELATLSSFTDIWHSTFAGCQFPDAILPGWEAFDLVAGPPS*
Ga0103786_1007822	Ga0103786_10078221	F060086	QEDPFELDSNLLLSSGRHGEDRKRQYNFLYDHETPLLDDLADLLH*
Ga0103786_1012950	Ga0103786_10129501	F030135	PRIAPEGLKDREELATLSSFTDIWHSTFAGCQFPDAILPGWEAFDLVAGPLN*
Ga0103786_1014098	Ga0103786_10140981	F060086	PFELDSNLLLSSGRHGEDCKRQYNYSKYTLYDHETPLLIDLADLLY*
Ga0103786_1015383	Ga0103786_10153831	F037503	MHLGAASELSVIEVELLIRLGGFTAYQTLTNSECYDIFLGVRAWVLRSLSERERTQT
Ga0103786_1015623	Ga0103786_10156231	F008361	TVLVNDVEELTNVELSEATKELEKATLAVENAETSKDRLDASLELKKATARLEAINYLS*

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