Basic Information | |
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IMG/M Taxon OID | 3300009361 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118143 | Gp0131536 | Ga0116590 |
Sample Name | Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_3 SPAdes |
Sequencing Status | Permanent Draft |
Sequencing Center | University of Liverpool |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 99039447 |
Sequencing Scaffolds | 9 |
Novel Protein Genes | 10 |
Associated Families | 9 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → Viruses | 1 |
Not Available | 4 |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 1 |
All Organisms → Viruses → unclassified viruses → Circular genetic element sp. | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | estuarine biome → estuary → sediment |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Sediment (saline) |
Location Information | ||||||||
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Location | United Kingdom | |||||||
Coordinates | Lat. (o) | 54.9632021 | Long. (o) | -1.6348029 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006143 | Metagenome | 380 | Y |
F013592 | Metagenome | 270 | Y |
F023115 | Metagenome / Metatranscriptome | 211 | Y |
F025033 | Metagenome | 203 | N |
F034185 | Metagenome / Metatranscriptome | 175 | Y |
F043408 | Metagenome | 156 | N |
F051104 | Metagenome / Metatranscriptome | 144 | Y |
F063747 | Metagenome / Metatranscriptome | 129 | Y |
F088833 | Metagenome | 109 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0116590_1000965 | All Organisms → Viruses | 3065 | Open in IMG/M |
Ga0116590_1000968 | Not Available | 3062 | Open in IMG/M |
Ga0116590_1001026 | Not Available | 2961 | Open in IMG/M |
Ga0116590_1002237 | Not Available | 2005 | Open in IMG/M |
Ga0116590_1002361 | All Organisms → cellular organisms → Bacteria | 1956 | Open in IMG/M |
Ga0116590_1016426 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 855 | Open in IMG/M |
Ga0116590_1021318 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 770 | Open in IMG/M |
Ga0116590_1053328 | All Organisms → Viruses → unclassified viruses → Circular genetic element sp. | 526 | Open in IMG/M |
Ga0116590_1059139 | Not Available | 501 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0116590_1000965 | Ga0116590_10009651 | F088833 | LMARAEKKEEKETSLESLMKFNVFLSIATLVTVAGATVADYILMAWTWI* |
Ga0116590_1000968 | Ga0116590_10009688 | F006143 | MSDEENPIEEKKTPTTKFAEWLMARAEKKEAKETSLESLMKFNVFLSIATLVSVAGATVADYVLMAW |
Ga0116590_1001026 | Ga0116590_10010261 | F043408 | LGETMKVRKEVSLTVETAQIANKMNNFSQWVRIGLRQYQHGEDVASETMRRMRWAKAAHMLASTLLEHALEIDPDYKGDVQTIIAKAMNQTTLEEFE* |
Ga0116590_1001026 | Ga0116590_10010264 | F013592 | MRIDMSLAPELVWLEEVLFEDSVIPLSTLAKFHPLVRIPVIGFQAADIVGTELAIRTIEAGGVGALELFTPEIRRYEQTALVGMGGMRI* |
Ga0116590_1002237 | Ga0116590_10022373 | F063747 | MKRTLRDAFDRWKDALIEQDKQITRAARHRAHARVTSMEDLIAETPADDIEGVGIKLALYVYMSGVDP |
Ga0116590_1002361 | Ga0116590_10023613 | F051104 | LFELRIAEAIEEEAVLSQNLIEEGFNHAFKAGELLQEVKSMLSSEEELEQWLQENCSKVEKGVASSCLRLFNGETVKVEATLKREENHKRERG* |
Ga0116590_1016426 | Ga0116590_10164262 | F023115 | MAINVSALSDFNNEVAGELLIRSVYEGATMDYITIKEGVKHQEPLNLFDVDLQVQSGTCVSTPSGSMIASQRDITVTPRTSFDGLCLKDLDTKYLGISALGAGSYNETFALANAYGDMLVNQFAKSND |
Ga0116590_1021318 | Ga0116590_10213182 | F006143 | MEEELEQKKTPTTKFAEWLMARAEKKEAKETSLESLMKFNVFLSISTLVTVAGATVAEYILMAWTWL* |
Ga0116590_1053328 | Ga0116590_10533282 | F025033 | WTKVEGGRRMNRRIKRNRAVPIHITLAPGLLDEIDARLSHKMSRSNWIRGACEMKLDKDVTEVNDLTDKQLVNILRNRHNYDGPAEAILKSLLEVLSE* |
Ga0116590_1059139 | Ga0116590_10591392 | F034185 | MSHDLLSYKEARIEALLQEINRLELENEKLTTYVFELCDKDCPDEYKKILKVDVFKG* |
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