NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009373

3300009373: Combined Assembly of Gp0127950, Gp0127951



Overview

Basic Information
IMG/M Taxon OID3300009373 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118094 | Gp0127950 | Ga0118719
Sample NameCombined Assembly of Gp0127950, Gp0127951
Sequencing StatusPermanent Draft
Sequencing CenterGeorgia Genomics Facility
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size861546028
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
Not Available4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Archaea1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)N/ADepth (m)143
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013484Metagenome / Metatranscriptome271Y
F014123Metagenome / Metatranscriptome265Y
F026198Metagenome198Y
F030981Metagenome183Y
F048391Metagenome / Metatranscriptome148Y
F056324Metagenome / Metatranscriptome137Y
F088317Metagenome / Metatranscriptome109Y
F091390Metagenome107Y
F098740Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0118719_1036872All Organisms → cellular organisms → Bacteria4062Open in IMG/M
Ga0118719_1060340All Organisms → cellular organisms → Bacteria2669Open in IMG/M
Ga0118719_1081457Not Available2073Open in IMG/M
Ga0118719_1121505Not Available1489Open in IMG/M
Ga0118719_1128475All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium1424Open in IMG/M
Ga0118719_1171701All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes1131Open in IMG/M
Ga0118719_1200980Not Available996Open in IMG/M
Ga0118719_1218438All Organisms → cellular organisms → Bacteria → Proteobacteria925Open in IMG/M
Ga0118719_1260757All Organisms → cellular organisms → Archaea776Open in IMG/M
Ga0118719_1294102Not Available643Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0118719_1036872Ga0118719_10368725F056324MKRKAVIIFIIFSFIVAFSGCAASKIYLMDVRYIPEKKAPPTSKTVGICAFEDGRREKEKEIIGLRHRPRKKVDFLKLEGISLSESVTQAVKDYFAEKGFEVTDCKGWDQSAEGLERLPNDLFLVVRGKIDSFKVEAKSGISITDTRYSVKMHAFIGQAEKRKMVTCTIESTPRTEKMGFDPEEVKARLNDVLTEVIRKLFEGKY*
Ga0118719_1060340Ga0118719_10603403F048391MSTEESHEEINSVISVDYLEKLVNEGYEIQGPRNDPSKDLTSFKIFLKKRREFVREDWLSDNGYQFVEPSTFTNGRRIAYKMIEGFPDERFKSNYSLRKGDQEIPLYLKVEFKVPQE*
Ga0118719_1081457Ga0118719_10814571F013484QTLVETLNRFLSLHPANGDEDAALRLVMELLELADVAPQAEIARAVGYSQARSLRTYKQRLEEEGLGGLFDRPITGRPAVTSHLAVERAVVQAVLEAVITEHVLPDDEALAQAVNGFLAEAQSPWAGQVTASMVETIRLRLEIQRPILAQQLQAANDSQPSAQEQVRLGRTKAGGAFILAVLLVETGWLKLAELLPMAPGYAVTAVQWLLTAIFAVIYDVRRAFHLDDVRDIGFALITGRARPLSHSTFQHLLHAIPAEAARRFYEATARWIVRGLGAGVRRISLDGHNLPRYTKVVDVIKGKIGNTGRILKAEEMVLAFDLDAWLWLALRVYQGTKKLSQALLEMVAELRRHREGIEGLWRIFFDKGGYKGQNFQALSALPDVHFYTPAVRYPTNVEQWEQLEEGDFDPDPFVFDKHADLPAQEQLTYRLADMTMTVNIREKNRVVGTVELRAIVIHDPKGQTPAEQWPLVVLTDDYQIDARELANEFGDHWGQEFGHRIGKHDLCLDIVPPGYRLTSRRDENGQLQREVEYDSTAFFLSSWLRCLVFNLMSLFAKRLGGEYARMWAGTLLRKFIRRPATLYLIGNELHVVFDPFQNQDDLRPLLDELNAKRVQLPWLNGLVVQFSIEEDEPLHPLAEPEKRNRLFGDG*
Ga0118719_1121505Ga0118719_11215053F014123MPRWIAIGTAPGWDDIKKFGEELHEPHNWHPDARTTIKTVFALSDGRLLAECHARSQEDFDAWLQQKGWTVESVTPIKHVANVGSIWEIR*
Ga0118719_1128475Ga0118719_11284751F088317MPGPEDKVKYPEAETFTQEQVSGYRPMKRRDLWYGEHDAPPLPPLDKSQLVKWIDSGGKEEEEARYVMMPPPELPYRKLPVSTKFISCNTRHLKEIGAFRTILPEKFGDAGYKAVDDCYASFAYAEFRAAQKRGQLKNAPNCSATEIGAFIATVYDIQNFPIVIAEASDERVRIQLYKGLPIYCPYDVRRGDYRLCAATAAYERELVKLCNPKLY
Ga0118719_1171701Ga0118719_11717011F098740MNMRKTCLLCVGGFTTLVVVWLSGLLLQTGHAGPAAGVGSVYATNVQQETGRHRRPVSLRMLAHVLHDCEQKSKPIHPGVVRWASRALPTEEVQKVS
Ga0118719_1200980Ga0118719_12009802F030981MGKVRRCDKRCHNARRPRCRCWCGGFFHGSAGTANRAVLSGDTTAFLKEHGFKEGETAYIEQKKLPVEVS*
Ga0118719_1218438Ga0118719_12184382F014123MPRWIAIGTAPGWDDIKKLGDEMQATRNWRPDARTTIKTVHVLADGRLLAECHGPKQEDFEAWLQQKGWTVESITPIQLVANVGSIWEIK*
Ga0118719_1260757Ga0118719_12607571F026198MDIEIAILVAGVLIMVGGIVGGGAIYSGLEKIAEA
Ga0118719_1294102Ga0118719_12941021F091390MSTKSTTIRINSSTKEKLENLDFVRKHTFDKILCELIDFYDKNKKGGKK*
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