Sample 3300009626

3300009626: Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP1

Overview

Basic Information
IMG/M Taxon OID	3300009626 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111485 \| Gp0134302 \| Ga0114943
Sample Name	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP1
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	52872775
Sequencing Scaffolds	33
Novel Protein Genes	38
Associated Families	34

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp. legu1	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	2
Not Available	14
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	2
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Beatty, NV
Coordinates	Lat. (^o)	36.96	Long. (^o)	-116.72	Alt. (m)	N/A	Depth (m)	10
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000402	Metagenome / Metatranscriptome	1180	Y
F002271	Metagenome / Metatranscriptome	576	Y
F002385	Metagenome / Metatranscriptome	565	Y
F007321	Metagenome / Metatranscriptome	353	Y
F008502	Metagenome / Metatranscriptome	332	N
F009170	Metagenome / Metatranscriptome	322	Y
F012883	Metagenome	276	Y
F014440	Metagenome / Metatranscriptome	263	Y
F014862	Metagenome / Metatranscriptome	259	Y
F015864	Metagenome / Metatranscriptome	251	Y
F018754	Metagenome	233	Y
F019112	Metagenome	231	Y
F019945	Metagenome / Metatranscriptome	226	Y
F020682	Metagenome / Metatranscriptome	222	Y
F021571	Metagenome / Metatranscriptome	218	Y
F022502	Metagenome / Metatranscriptome	214	Y
F025500	Metagenome / Metatranscriptome	201	Y
F031922	Metagenome / Metatranscriptome	181	Y
F037598	Metagenome / Metatranscriptome	167	Y
F040992	Metagenome / Metatranscriptome	160	Y
F042786	Metagenome / Metatranscriptome	157	Y
F044025	Metagenome / Metatranscriptome	155	Y
F044985	Metagenome / Metatranscriptome	153	Y
F046263	Metagenome / Metatranscriptome	151	Y
F052482	Metagenome / Metatranscriptome	142	Y
F054932	Metagenome / Metatranscriptome	139	N
F055500	Metagenome	138	Y
F063181	Metagenome	130	Y
F080645	Metagenome / Metatranscriptome	115	Y
F082658	Metagenome / Metatranscriptome	113	Y
F085418	Metagenome / Metatranscriptome	111	N
F088183	Metagenome	109	Y
F088534	Metagenome / Metatranscriptome	109	Y
F106141	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0114943_1000135	All Organisms → Viruses → Predicted Viral	2651	Open in IMG/M
Ga0114943_1000502	All Organisms → cellular organisms → Bacteria	1895	Open in IMG/M
Ga0114943_1000770	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	1708	Open in IMG/M
Ga0114943_1000905	All Organisms → Viruses → Predicted Viral	1634	Open in IMG/M
Ga0114943_1001033	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp. legu1	1578	Open in IMG/M
Ga0114943_1001376	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales	1465	Open in IMG/M
Ga0114943_1001760	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1352	Open in IMG/M
Ga0114943_1001841	Not Available	1332	Open in IMG/M
Ga0114943_1002217	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1249	Open in IMG/M
Ga0114943_1002273	Not Available	1239	Open in IMG/M
Ga0114943_1002716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1169	Open in IMG/M
Ga0114943_1003654	Not Available	1055	Open in IMG/M
Ga0114943_1009398	Not Available	770	Open in IMG/M
Ga0114943_1012157	All Organisms → cellular organisms → Archaea	708	Open in IMG/M
Ga0114943_1013726	All Organisms → cellular organisms → Bacteria → Acidobacteria	680	Open in IMG/M
Ga0114943_1016119	Not Available	645	Open in IMG/M
Ga0114943_1016531	Not Available	640	Open in IMG/M
Ga0114943_1016911	Not Available	635	Open in IMG/M
Ga0114943_1017497	Not Available	628	Open in IMG/M
Ga0114943_1018195	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	620	Open in IMG/M
Ga0114943_1018205	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
Ga0114943_1018703	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
Ga0114943_1018968	Not Available	613	Open in IMG/M
Ga0114943_1018980	Not Available	613	Open in IMG/M
Ga0114943_1019419	Not Available	609	Open in IMG/M
Ga0114943_1020379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	600	Open in IMG/M
Ga0114943_1025165	Not Available	560	Open in IMG/M
Ga0114943_1025929	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	554	Open in IMG/M
Ga0114943_1026203	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
Ga0114943_1026340	Not Available	551	Open in IMG/M
Ga0114943_1027073	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	547	Open in IMG/M
Ga0114943_1029009	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
Ga0114943_1032891	Not Available	513	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114943_1000135	Ga0114943_10001354	F015864	MTDLRYSTGDELEGFLYEKCRQDPDLLATIINEYVCSLSDNKLIELEDFLSNNFGDD*
Ga0114943_1000135	Ga0114943_10001356	F080645	VIENMDMDDLVSYAVQMMYQSFDKNPGQNDTDVDMLIEDIWVAEGEDDDSTEEFISGIVGSELASEIVKTTQF*
Ga0114943_1000502	Ga0114943_10005022	F019945	VVAQLAALEAVELLALTRHLRPRLVPSEEPPAAAVAERLVQMTAEELQELGQRLRAQLAAEG*
Ga0114943_1000770	Ga0114943_10007703	F012883	MNFRAIINRTIILSVFAIAGYLLARSMYYGSFLGILLAMVAIVAWTIFLYKLSSLQAEPDPAEEVPENY*
Ga0114943_1000905	Ga0114943_10009053	F088534	MFSTTLTNPKTFGNTYQWAILSVLPMDSDKNRHGLNSPEIKSALGLSNAARTSLCLMLKEMAGKGLVQRYDLKIGNRRIVSYKRLLPLRKREQIARLIRGV*
Ga0114943_1001033	Ga0114943_10010331	F044025	VKKMALALILTAAVLAAGCQRNYYTSKAKSNDCGCPAKKGMVGY*
Ga0114943_1001376	Ga0114943_10013763	F018754	MKQINHRLFIAAIVVGGMFVGMVKGQEARSRWVSKMKTRQENRKQKPADNKGEVPLD
Ga0114943_1001760	Ga0114943_10017601	F021571	MSHHEQIRTQSKWLTQGKKLRHCKVVNAYDPTIAPIIKGKSNCPAQFGRKPGIVSEPATGFIFANLTPQGNPSDPSYGRPLIDKVQSAIERVQTGPKRQIHSVAGDLGFNDPLLRHTLHQRGILTVGIPKTIEPIEPHPSAQEVLDILNGAGLNRKRTPHQVHLACASGYSRPVVESHIASLLSRGAGQVRYK
Ga0114943_1001841	Ga0114943_10018413	F019945	VVAQIAALEAGALLALTRHLHLRLVPGEEPPAAAVAERIVRMSAEELRELQQRLHERLPLESAQG*
Ga0114943_1002217	Ga0114943_10022171	F022502	MRCFGRQCRGHGHVFVKLVRQTEQKLLALGEPITALGQHAQQLLAQATALSDATRERFAEAFTAAMRSHAHIRQQSTRLIHGQKLRHCKLVNAYDLTIAPILKGKSNCPAQFGRKPGIASDPAAGFIFANLVPKG
Ga0114943_1002273	Ga0114943_10022732	F031922	VRAYTTAVEIYQSDRLRCMTVWCLRCIDEAERRSQPRDTSVATGASTPASDPISTGEQPSHGPSAATFQQLMQEHLQLMDRALYDDAAILIPIIQDFMQRCRLYQPHLAIPAQLKRLTGHLQYWETFLTALNS*
Ga0114943_1002716	Ga0114943_10027161	F002385	LSQQAQELSQALNKAMRRFGRQCRGQGKIFVTLVRETERHLLALGDPIEAWTQQARACLPLDSTRSQTQRERLLRDLEATSVAHRHITKQSQRLTQGKKLSQCKIVNAYDPTIAPILKGKSNCPAQFGRKTGIVSEPASGFIFANRVPVGNPSDPSYVLPLLDKVQHAIDLVASSTRLRVHSLGGDLGINDAQLRQALHARGILTVGLPTSVEPINQAPSPEEVLEILNASGLNRIRTPHQVHLACASGYSRPVVEGHIATLMARGADQVRYKGLEGAVIQMGMTVMAHNGAVLVRIRQQRLSKRGQKFRRWLGLKRHNANQINDQKN*
Ga0114943_1002716	Ga0114943_10027162	F082658	GLVSPAHLLVDTFPSEQGSQRVTDATTLYKVQKKSCDSSRQSHTKAPHRPRP*
Ga0114943_1003654	Ga0114943_10036542	F019945	VRRRRDALPLEAVVAQLAALEAGELLALTRHLRLRLVPGEEPPAPAVAECIVQMDAGKLWELVRRLRERLAAEA*
Ga0114943_1006209	Ga0114943_10062092	F008502	MHYGLSTDELLQGTKFKAALAERMQVWDDIVARLTAQGGVGETMIPGSPLGAHLAGSRGVKYLVNRGPCFTHVDPMDGFVLGLDPVKDSIRTLGRRPYSVNNLTIVLGIHDPDSDLVASFEELLERARLDLVQGTRKDELVALVNATAPMSMTS
Ga0114943_1009398	Ga0114943_10093982	F014440	MDAKEHVKRALLHVFRIYKVHTLSLHVGPLEVHIRGYNKRWKEALQPAIDELVTEGLVERQGSKMALTEKGKEGVASRP*
Ga0114943_1012157	Ga0114943_10121571	F019112	MLARCKVGFNFTTVDSPYYIGGMCDPLIDLIDIEKKLPPHIKKSQYKKDRGSTKVSAEYFISYEDADLPKQEQEGSFAKFVGRDPYEELLENDIELVKNLIKKSYGVSKNQNDKIEHKIILEDRKLIKV*
Ga0114943_1013726	Ga0114943_10137261	F040992	MEIDPQQLPEDPAALRQIVAGLLEEVDAKERRLRQLQHLLEQLLRHRYGPRRERVDENQMFLFAAGMLRASPQ
Ga0114943_1016119	Ga0114943_10161191	F014862	MQTYHLTDEFTDAPAEHALLASLSQTPVVYEALLDCLSADLFPMEPATWQALTLALETGKYPSVPAAWEPAPHPHATAQRLLDLHQRRLLAATQERLAQALFDDTVPATEIATLLEEEALRVQAALRS
Ga0114943_1016531	Ga0114943_10165312	F046263	VLSHILLIVLGLLLIILGFWGGHVWPRPYDSLVAWCAPIGLVVTLVGIVLLFIPSFFT*
Ga0114943_1016911	Ga0114943_10169111	F063181	MPKKSFSFQKRTPDPAPPAAGPDIAQFIAGQPTALTRKTIALPQAAFVRVKIEAAKRGIPASRLWGEIVEAYFKTRAE*
Ga0114943_1017497	Ga0114943_10174972	F106141	MTELSLTTPRSVFFQKGNERILIWTNHKRYTVTDMVAGGTKRYTKQLAMALSASLMAEGYEATVHD*
Ga0114943_1018195	Ga0114943_10181951	F000402	SSWVEKLLFFLVCLEVCKPISPQEHIMEEHDDCMSGVCPGASENGETVSIYVAHNHPLLQLKRALPWEALFEVMRRHWRQAGKNTDGRPGLSWALSLYVPLIVLMLVKNLRSRDMEAYLAENAVARVFIGRQDDPRPQIRDHANIARAYAALGKDGVDEINALMLHVAKDFGFADASILSSDTTAQELPIGYPNEPGILRGWAQRC
Ga0114943_1018205	Ga0114943_10182051	F002271	MTPAPRHTRQAQAGGEQPSRTDNPPQKKAGRPPGAPSTIVNLRIPVDLLAQLDRYIDRLEVQTGLKANRGMIARRAVELFLETRTTGTSKLS
Ga0114943_1018703	Ga0114943_10187031	F055500	MSDDMKDTIDQLANSLQTVTLLSTKLRRELGESAQQAVDLEAAADKAVRVIKRLQPSDEE
Ga0114943_1018968	Ga0114943_10189682	F020682	VSEIVEAQVKSGRYRDFSAAVQEATYNYFLGAANPFEEYGVTPEEVERAYEKAVREIDQERKAGKLRPWKT*
Ga0114943_1018980	Ga0114943_10189801	F088183	GRYTLPTGSKTTNWVRETGGIDGEPYGLEADAFPPDVIRAAFLAAAAPYLRAFRPLDGLCALLEEAARRRLDALALEAVVAQIAALEAGELLALVRHLRPRLVPGEEPPAAAVAERIVRMRAEELQGLVRGLRERRAAEA*
Ga0114943_1019419	Ga0114943_10194191	F085418	TDLLLVWSREAGITERTAALRHQMHQDRAQTARLDAAEAGINAAYRKRWHRLRGVAALCALAALLLFVYNAL*
Ga0114943_1020379	Ga0114943_10203791	F009170	SCRGQGRVFVKLVRHTEQRLLALGESIHTYGRQAQERLEQTTVLHDAQRERLTRELATAMRAHEHIRTQSKRLTQGKKLRHCKVVNAYDPTIAPIMKGKSNCPAQFGRKPGIVSEPATGFIFANLTPKGNPSDPSYVLPLLDKVQEAIERVETGPKRHIHSVAGDLGLNDAALRHALHARCILSVGIAKTIEPLVPNPS
Ga0114943_1025165	Ga0114943_10251651	F014862	MQTYHLADEFTDTPAEQALLASLTTAPARYWELGDTLTADLFATEAATWQALALALETGQPSCVPAAWSPAPDPHAIAQRLLDLHQRRLLATTQERLAQALFDDATPATEIATLLE
Ga0114943_1025929	Ga0114943_10259291	F025500	MCRYLEVADRCMTTAIKLVLAQAFGAGATALVYQLVRDRVLYRRPCAERGPSTLRLHRGSQLLLQWFVFADAQASALSGSGFGALGSQGTRVTRRRRQLGMLAGDHGDALAP
Ga0114943_1026195	Ga0114943_10261951	F054932	VKANACLSQLHARAAVKTGATLAQVLQVVQYVGLTGMVKWVMVGHDAFTAAEADVPEAQRLTPARDAWTGQEQRFQDIQHYLRRDGHAELSPQWQKLAEVAPAILDGYIRMRENFVKPDPLGAVPKKLMELAIIAADVVQAHPWGAVRHTQRFVQDGGTVPELIEAVALAMIEEGVHSYKTCGR
Ga0114943_1026203	Ga0114943_10262031	F052482	VLDIEAPQHWCETSIERLAPWVWLMQSMIGVWYLTEGNALPEAESARALLGEWDSEWSLRHMVKVLRRAILNQVINTDSAEEADLGQLIEALKNYVNTAA*
Ga0114943_1026340	Ga0114943_10263401	F019945	VPPAPLAALQAGALLALARHRRPRLVPGEAPPVAAVAERIVQMNAAELQELGQRLRARRAAEG*
Ga0114943_1027073	Ga0114943_10270732	F044985	MANRPPITAAIDLPPDVLNALKAAGPNERGNYSLDMAVWVNEKRSSDRAPGYTGSVKIKGAKDGPKGYASVWSN
Ga0114943_1029009	Ga0114943_10290091	F007321	MLAGTLQTWITRHIAVRQRLERICTSYLLFLMVVTTKHSLEEAARFSRLHKSLFSKMLQSHAKVAITTLENLSKTQSRQFAKALQ
Ga0114943_1030480	Ga0114943_10304801	F042786	CLHGATQLSAEQRGYLDTQLTAALEAHHRIEHQSRRLTQGKALPYCKIVNAYDPTIAPICKGKSNCPAQFGRKPGIIAEPAAGFIFALHLPVGNPSDPSYVEPLVDHVEQAIARVGTRPAPAIHSLAGDLALNDAALREILHARGILTVGIPRTVDPLPPSPMPEDVLLSLDEAD
Ga0114943_1032891	Ga0114943_10328912	F037598	VLPLDLCTVTLTEAQWSTIRTALICFACDCRVAGKSTDADHYLNAYNTLKAAMGIE*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009626: Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences