Sample 3300009758

3300009758: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3611_800

Overview

Basic Information
IMG/M Taxon OID	3300009758 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114292 \| Gp0127549 \| Ga0105211
Sample Name	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3611_800
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	180915659
Sequencing Scaffolds	20
Novel Protein Genes	31
Associated Families	25

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	5
Not Available	3
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	6
All Organisms → cellular organisms → Eukaryota	4
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Southern Atlantic ocean
Coordinates	Lat. (^o)	0.0014	Long. (^o)	-33.4979	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000021	Metagenome / Metatranscriptome	6082	Y
F000052	Metagenome / Metatranscriptome	3223	Y
F000067	Metagenome / Metatranscriptome	2732	Y
F000068	Metagenome / Metatranscriptome	2731	Y
F000073	Metagenome / Metatranscriptome	2639	Y
F000080	Metagenome / Metatranscriptome	2485	Y
F000406	Metagenome / Metatranscriptome	1172	Y
F000786	Metagenome / Metatranscriptome	891	Y
F000879	Metagenome / Metatranscriptome	850	Y
F002056	Metagenome / Metatranscriptome	598	Y
F003611	Metagenome	477	Y
F004175	Metagenome / Metatranscriptome	449	Y
F004957	Metagenome / Metatranscriptome	417	Y
F010519	Metagenome / Metatranscriptome	302	Y
F014224	Metagenome / Metatranscriptome	264	N
F015490	Metagenome	254	Y
F021543	Metagenome / Metatranscriptome	218	Y
F030654	Metagenome / Metatranscriptome	184	Y
F047103	Metagenome / Metatranscriptome	150	Y
F050133	Metagenome / Metatranscriptome	145	N
F066422	Metagenome / Metatranscriptome	126	N
F068901	Metagenome / Metatranscriptome	124	Y
F075646	Metagenome / Metatranscriptome	118	Y
F083659	Metagenome / Metatranscriptome	112	N
F088751	Metagenome / Metatranscriptome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0105211_1002439	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	1655	Open in IMG/M
Ga0105211_1005198	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	1308	Open in IMG/M
Ga0105211_1005862	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	1262	Open in IMG/M
Ga0105211_1013743	Not Available	973	Open in IMG/M
Ga0105211_1014368	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	960	Open in IMG/M
Ga0105211_1024988	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	810	Open in IMG/M
Ga0105211_1025708	All Organisms → cellular organisms → Eukaryota	803	Open in IMG/M
Ga0105211_1035686	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	728	Open in IMG/M
Ga0105211_1040664	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	700	Open in IMG/M
Ga0105211_1050352	All Organisms → cellular organisms → Eukaryota → Opisthokonta	658	Open in IMG/M
Ga0105211_1053979	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	645	Open in IMG/M
Ga0105211_1059534	All Organisms → cellular organisms → Eukaryota	626	Open in IMG/M
Ga0105211_1064221	All Organisms → cellular organisms → Eukaryota	612	Open in IMG/M
Ga0105211_1064667	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	611	Open in IMG/M
Ga0105211_1071338	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	594	Open in IMG/M
Ga0105211_1087077	Not Available	560	Open in IMG/M
Ga0105211_1099485	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	539	Open in IMG/M
Ga0105211_1103555	Not Available	533	Open in IMG/M
Ga0105211_1112605	All Organisms → cellular organisms → Eukaryota	520	Open in IMG/M
Ga0105211_1119216	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	511	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105211_1002439	Ga0105211_10024393	F021543	VVDKPMEECNIEPIKTCKHVTKLVPKLSPVQECVDVPKEICARSKTNPRKVKKPVVKKWCYIPSKESGLE*
Ga0105211_1005198	Ga0105211_10051982	F000879	VCSVLAAVSADPQVILGGLGYPFALGSSLTYTPHVVKPVIKEIEVPVKTITYGIKETGCKNSFGFSVPCLAEGEARRKREAEEEKAVAAPVVTYAAGVPFGYGYGLGLGLPYTYAAAPAITVAEPKVTEVEVPQFVYKAVEEKIDLAPLCHNGFGFPVPCA*
Ga0105211_1005862	Ga0105211_10058622	F050133	MTEFTMIFQVIGLISFTLQSSIGFVVIPYPTYPLSPVSLLYPSHPLYNTRIIPQSPLLIQPSIIQPSVKPEYSTLTPGLKLSPTRSANVNLTEEDEVPLASTRLRARNLDLCYFLANDIFTSHVPCNPNWGDGTLEGVKQYINELTFEANRMIGENNLRFAWKGPYERHDPDAKSPSNPTQDVLSVAGYGCDAVVFLVFNQFSSDCKTQTTGHEFGGVSYGGMCEQEQGLGYTVVVDQGFLKDAWTGPQILAHHLLLMLTSDLKDTKKTCPARESLLYPQMYPGEQRVDQCVVDKLNRSKVSLRKCMQD*
Ga0105211_1012312	Ga0105211_10123121	F002056	LFKEFQISASYEGLVETVPGVKQDLLKMDTYKMDMTKDALFRGEFEVVKELMATLKDGEAAKDICDKVIDKNGTKKTGGTGIKQLRENIAESKLSYEIMDEAAQAFLKAKIMDNIHKYFYLIIFSAYMREAAQKARDMYAEEEKEAVVLTSGKCSI
Ga0105211_1013743	Ga0105211_10137431	F083659	ITGAAILSENDEWFEAAQSFLMDPEPLVTALGAQRVKRDASYDKEFTLGALGLGFGLKYTDPANKMKGGKAYAKFPLKKFISKAHSEMVDLQMSFDGGDAVDGLFTMSVDYTLTHSDGDGKESGTFTVSRKKVGGLWKTELSTTSGSSFAHRLIPLFSITAESDRKTKMHSAYKGTYGSLTFNIDRVPGEKLAAEVDFNGKKYSFVVSINKAAMSADIVINAAGNEYQLNGKVSKTDSWKVSVTGDVKGAIDATMLIKKDYSEAKIEISHKNAKMLQMRLKGSINPDGSFKAKAKFSLMGGRIATGKMEASYENHKFNIIIKPS
Ga0105211_1014368	Ga0105211_10143681	F010519	SKFDSLASRSSKLSDALLRALSRVLNFWDGDAFLFGEVLTADSWERDRLVDTGLDGFRIDNLNSGLNRGDDRNIVASLLGNFLAVIVSVAVISVSWGWLADCDHLGVTLLLECNFNCLGIGGFSLLLVGVSTDFIVNLLNAFSADSAGDWVTLLSVDDDLDGKFNWVANSLKGWGADLGSFNNILN*
Ga0105211_1021798	Ga0105211_10217981	F000080	DLERTEVKKWLAQILEILMAERAKDQKQAEGNKLDALIQKHEELIPNVQKTAVMVDLYWKCYAYGDELKPHVEFLDGIMMSSTRDIAPSCIENVDELIERQEKSLSQLDAKRNVVTDLIAKGKVILQNPDKPKFLEGNVKRIEEGWDETKKKAQERLQLLNETKDAFIGYAENNETIANEFEIAEEEIKKVKKIFNLDAANADLKKRQDLSKKSTDTINGLFASINANMATMSITIPEDKKKVLNKEIKAVQDKLEVEGRFRATVQKIEELVASLTAFDNS
Ga0105211_1022618	Ga0105211_10226181	F000068	TKCSKWPKEVCTVSKKPVKKFTPITGCTKEPREICAPAGCGFKEGAEECYDKKQTVVQDAPKEQCSLEPQRTCKHVTKLVPKLSPTEECVDVPKEVCTRSRTNPRKVKKPVVKKWCYVPSEESGLA*
Ga0105211_1024988	Ga0105211_10249881	F068901	LQQMLPEDKKGPMKDEVKEISTRMEILKKTQDRLAFIDDFNKRLAVFDKNVTDLEDWLGEGRNRLDGIKNPTELLSPEDRVTKTMEVQEDITKKSEFCSKQETEKAEIFPKQGEKMSSDAKKFVERLTNVRSELNNLDAEIKSECAKFSEDVKYFAEFQTGIKAFEPWMRKAEQRIIDGLAQPKSLVEACEILGDSKVN*
Ga0105211_1025708	Ga0105211_10257081	F047103	LVGHWTKCAKNGNIWPKMTKNAYFGPNLADFGPNILIFMGVSKSFGTNITENHFGNLSALFFGQALDQMGQKCQYLAQNASFRPNLAVFGPKIQFFGGRE*
Ga0105211_1025709	Ga0105211_10257091	F000067	MFPLAEVLLVSIILGLTTSAYVPTTTQPSPQEYPGPAPQPEYDPQIGQTNVDGYSRNQNPYCHMEEKVVFENQCEPYIEKTCWTQNEEDCKPVMYKNCTGVIQTKVDRVCFNVNELVCSLVEAIHYETLEETYQVQRCFTGKDRVCDTTFKIDTTTKDDYQCINVETPNCYMEEKVINDVTCTDTVEFDCKRVKSTKNDGYGAPDVMCTRTPKQDCYNIPRKVCWLSI*
Ga0105211_1026341	Ga0105211_10263411	F000021	KKVCDKVIDKNGTPKTGGTGIKQLRENIAESKLSYEIMDDAAQAFLKSKIMDNIHKYYYLIVFAAYMLEAAELARNVVSDELKSEVTLKGGKCAIPANQLKLVKTFGQFMEENASLRGLIETGKGNLQWERDIPPAALANLEDLAAKDFKGNLGKIIHDIYQTAHIMFCDMPQGDHKKRAKYRFASKTLMRILPSGLKTEVEGLIETNKMTLDLYEILGQCTWTTPAQ*
Ga0105211_1035686	Ga0105211_10356861	F000786	MSLSEVESDLPEDIKERALSCFRAAISDKCTIQQAIEKVQKDALSEVETRFKGQRFKVNNFTSQKHDLILTKGFIKFDYNTNVITINVNKFGNGNAQFSVGMGVKKMVCPDPFMGKLSDPNMNR*
Ga0105211_1038975	Ga0105211_10389751	F000073	MEENAGLRTMIDTGKGNLQWERDIPPEALANLEGLVAKDFQGNLGKIIHDIYQTAHVMFSDMPLGDHKKRAKYRFASKTLMRNLPAGKKTEVEGLIAKSEMTMDLYEILGKCTWTQPK*
Ga0105211_1040664	Ga0105211_10406641	F066422	MSGLCLMDGLPLTEFRILGEKCSTMPDMRDEKNRRMEFSTNTISILNSLEMMGYKVVTSGAFAGSNIGSLSQKEFIWTLHRSSSELEYL*
Ga0105211_1046815	Ga0105211_10468151	F000052	QEEECEENFRKSCFIEYEKIAFNETVEICRTPLVKDCDVQGPEICRTEVEEKCEDETSGYTTNTKCSKWPKEVCSVSKKNVKKYTPITGCTKEPRELCAPAGCGFKQGAEECYDKTQTVVQDAPKEQCSLEPQRTCKHVTKLVPKLTPTEECVDVPKEVCTRSRTNPRKVKKPVVKKWCYVPSEESGLA*
Ga0105211_1049896	Ga0105211_10498961	F000021	MDTQVKVEIMDDAAQAFLKTKIMDNIQKYFYLIVFAGYMREQAAAAREAVEADKKAAVALPVSGKCSISATDLKVSSTFVQFMEENASLRTLIDTGKGNLQWERDIPPEALANLEGLAAKDFAGNLGKIIHDIYQTAHVMFGDMPQGDHKKRAKYR
Ga0105211_1050352	Ga0105211_10503521	F004957	MNVFAVFLSLIVSVTCLKPCPGDTRGDRRCNHDSTHRVCAKIGVEGTSFWEFTGQTSWCGTIGNYGGPYGSLPRCPPEEPTWCICKWATARWIAGEGCGDAVEFDCDATDVCDLKASYLDFNVNLKPAHDCMEKKCKEQWDACPDNRVSNGV*
Ga0105211_1053979	Ga0105211_10539791	F000406	GKKKIDRVLDICGPIPKGTGIQNLRECVIETKWKYDVASEDKQVAWKALILDFMERYFYLICFATYCLEEGPGGYNHSFSWWMDEHKDLRIMIDQGKDKLEWYRTVDAAKLEHLKDMMNAPDYKENLGTLIRTIYDFAFVTYADLPRGPIKNNSMRRLAATTLLDILPPAIADRVNKKMEEDPNGSHDFLTLVGLVSYYGADDD*
Ga0105211_1057891	Ga0105211_10578911	F000052	IFCSTDFRSLNIAILYKGCPTHSYSFILVKDCDIQGPEICRTEYESECWTKQEVHDVEDDVVECKTEVEEKCEDETSGYTTNTKCSKWPKEVCTVSKKPVKKFTPITGCTKEPREICAPAGCGFKEGAEECYDKKQTVVQDAPKEQCSLEPQRTCKHVTKLVPKLSPTEECVDVPKEVCTRSRTNPRKVKKPVVKKWCYVPSEESGLA*
Ga0105211_1059534	Ga0105211_10595341	F075646	MTFSPLIIWAKATFFFEQLFLVVARTWLVTKSECLFFGPKFRFLAQKSDFCHTTPIFVDDPFLALDMTVNFPPWKPFFDFPFRSYSCFRKKIRLTPQKVFPPLTVGVPSASKSPSALSAQALRARALRARA*
Ga0105211_1064221	Ga0105211_10642211	F004175	LIDLTLACEDGNSKLVEVVTVADVDAEDHVGNSLLQIWELTFGPKAKL*
Ga0105211_1064667	Ga0105211_10646671	F030654	DTQMVTVCQPTPGYGYHSYGHNYCKEVAQETCYNVPVVTPVDPAVEVAYPEPIKTCVNKPIDLIVISCEDLTAEKCITVPEVMDDIEVEEKCITQLAAPACQTIDLTLPKQVCKEINYGYAEDVHEVEPVTYAPEPEYPAPTVVPAYSG*
Ga0105211_1071338	Ga0105211_10713381	F066422	MPYLLVRESFMSGFCLVDGLPLTEFRILGEKCSTMPDMRDEKNRRMEFSTNTISILNSLEMMGYKVVTSGAFAGSNIGSFSQKEFIWTLHRSSSELEHL*
Ga0105211_1087077	Ga0105211_10870771	F003611	PLTSKKQGIIKDNMKEIFYALYFALHFVGAFLGLVVAIYVSTWLGLSMFLFFIIKFVLRLSTP*
Ga0105211_1099485	Ga0105211_10994851	F015490	MSCSPDHTSATDGCSVFKFAGDGVSVQQIFGGPAWSNQAAGPLDGNNGMPVVVENSAGIFDIIPGNQIDFSVSCTTAETVDVAVSITYAP*
Ga0105211_1103555	Ga0105211_11035551	F088751	SYRDSNETPFSCKHSVKLQLAARGKNVLFPQNLDIWGQKSIFCLVIAIFVDGTNDHYTRGYNFPIGTTPKKFSVSELGVIFWGSPLFLAVFGHRVRRATTLNFGPISTKLGGIVRAIKKMTQKDNGPGPGRNYGETGVFTFGRKVVFGLKMGLTPKNHPKHFPPLFGQRHF
Ga0105211_1112605	Ga0105211_11126052	F004175	VTLACEDANSKLVEVVTVANVVDEDRVGNSWLHTWKLRLGNEAKLLFRAQGLVKILK*
Ga0105211_1119216	Ga0105211_11192161	F014224	YKEDCEYQWEGHGNDKVWAPIAGTCKSNPYETCSDVTKSKAVQVPYPVCRDIPEQKCVDVPRQECVQVPDQVCTNQPLQKCQDVPRQACQQIHKKVPNRVSRKVPKKVCQDTGSHLNGVAVGNGPVVIDARKNEKSVQFEEGVETPNSIVIED*
Ga0105211_1127755	Ga0105211_11277551	F000068	TGCTKEPREICAPAGCGFKEGAEECYDKKQTVVQDAPKEQCSLEPQRTCKHVTKLVPKLSPTEECVDVPKEVCTRSRTNPRKVKKPVVKKWCYVPSEESGLA*
Ga0105211_1128505	Ga0105211_11285051	F000073	IREAAILCKDAASDEDKKNFALTGGKVSTPADKLKLPKTFAQYMEEHSNLRTVVEEGKGKLQWERDIPADALANLEDLASKDFKGNLGKIIHDIYQTAHGLFRDLPQGDHKKRAKYRFASKTLMRVLPADLKAEVEGLIDKEAMTMDLYEILGQCTWGKN*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009758: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3611_800

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences