NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009917

3300009917: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 7, 8m depth; RNA IDBA-UD



Overview

Basic Information
IMG/M Taxon OID3300009917 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0116874 | Gp0151167 | Ga0132239
Sample NameAquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 7, 8m depth; RNA IDBA-UD
Sequencing StatusPermanent Draft
Sequencing CenterMarine Biological Laboratory
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size29885096
Sequencing Scaffolds9
Novel Protein Genes12
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available9

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biomemeromictic pondpond water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationFalmouth, Massachusetts
CoordinatesLat. (o)41.548517Long. (o)-70.622961Alt. (m)N/ADepth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005089Metagenome / Metatranscriptome412Y
F015858Metagenome / Metatranscriptome251Y
F025879Metagenome / Metatranscriptome200Y
F025994Metagenome / Metatranscriptome199Y
F029761Metagenome / Metatranscriptome187Y
F042640Metagenome / Metatranscriptome158N
F058819Metagenome / Metatranscriptome134N
F073267Metagenome / Metatranscriptome120Y
F073276Metagenome / Metatranscriptome120N
F076034Metagenome / Metatranscriptome118Y
F091416Metagenome / Metatranscriptome107Y
F105059Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0132239_102557Not Available1015Open in IMG/M
Ga0132239_103015Not Available945Open in IMG/M
Ga0132239_104210Not Available809Open in IMG/M
Ga0132239_104807Not Available764Open in IMG/M
Ga0132239_105561Not Available720Open in IMG/M
Ga0132239_105754Not Available710Open in IMG/M
Ga0132239_109760Not Available571Open in IMG/M
Ga0132239_112359Not Available520Open in IMG/M
Ga0132239_113286Not Available505Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0132239_102557Ga0132239_1025571F073276RVRSQIYTEEGENSTNIFPRVFFAVPTLTNNPVTRRDTYQVTLFFDDLLGYNEQGDVDTTLQITKWSNLIAFAEKFVLHLTTTKTTNSIPEEVNLTLDSFTSIQRLITVQATFNISIKSEC*
Ga0132239_103015Ga0132239_1030151F025879HEYYTKLQYCKVGVQMRQSNYGWSVSGTDCMMNGTPMIFHDSLCYREIDPSGLFFKYKKDFFNLLNSFLDDDEFRIKHELRSIERAKELSSNEANMIKQLHKKLN*
Ga0132239_104210Ga0132239_1042101F076034MNDSSPQFKMREPIITIAAKQTPVIDRLHDCMTQALAYATAIRDNAQDDGHPIPIDLVTSFQNDYNKIIGSLHEAHHLTS*
Ga0132239_104304Ga0132239_1043041F105059CYNWGYDVFVDGEKIGQINDTPEELADLLNEYFNTKEK*
Ga0132239_104807Ga0132239_1048072F073267MLYSIHNQPPAPFPHPIPMPDGFTRTDASTFTQEEIQAAGYSGPYTEPSYNSSTEQLLWVNGEYVIEALPPVPRWVDFSSVMMSLPSINIMLGTLLQNAPGLYGGLVVGLQNASEGDTRVFLNSWNAGYAMELISPELITTVQEIAGEYDLPQSFIQALSPQT*
Ga0132239_105561Ga0132239_1055611F029761MKKVVDVQPGFISNEVYKPEQFGNSVKLIDSNGNKVGTMGVSIGTRKQAIKEGSAIQAFMNKNGKKTYRRVDMSVYDSL
Ga0132239_105754Ga0132239_1057541F025994MSKQEIQHLIDHAIREHELRVALWSGLLGLLLLLGTWHAIWMCR*
Ga0132239_107515Ga0132239_1075153F091416MKQFKNILLRILATFAATGLGVVGAGTIAGVPVWKAV
Ga0132239_109760Ga0132239_1097602F005089LHSIKLTETLALENYNQRNGVVDYRLDGVCNHYFPIYEGVNPSYRNGEICLTCKVAKTVKGQLRYTFQIDGKRIAEKRIVSEFLARGAFQG*
Ga0132239_112203Ga0132239_1122031F058819VELHWFGKHGGAESYQFRGLIQDLQNANADIINISQPWNVAASPRANSFDKTIIKTNQRVNKRKQIKCSIPHEDAVYVASLFYSPEVYIIEGGKYVNVTISNAEILTDDNRATDIEVNFEIVYPNKPTAQL*
Ga0132239_112359Ga0132239_1123591F042640YEELVHTARRFHDSPRDLVHHTYLQCINALESNQNILENLPGYFHTSMWNQAQNLFRKLYEIHETPTDTLVSDYDISEAIKREEAMIMANHLSWFDRTVLSLYLDGWSMAQVARESGINVSVLYESISQSKNKLRYVISKRTKEK*
Ga0132239_113286Ga0132239_1132861F015858MSNLISWGTVYCETWWGDTDRTTLSIQNESAPPCFAPINDIAIAFQERVEADGGVLEGYACLVAALQDLGEDNYYELFDTYIQRMTDDGATLEGRDCLVEQLFNLN

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