NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009942

3300009942: Termite gut microbial communities - laboratory nest. Combined Assembly of 9 SPs



Overview

Basic Information
IMG/M Taxon OID3300009942 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0120447 | Gp0151146 | Ga0132217
Sample NameTermite gut microbial communities - laboratory nest. Combined Assembly of 9 SPs
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Luxembourg
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size178119209
Sequencing Scaffolds6
Novel Protein Genes7
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Coleoptera → Adephaga → Caraboidea → Carabidae → Trechinae → Trechini → Paraphaenops1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera1
All Organisms → cellular organisms → Eukaryota → Opisthokonta1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMulti-Omic Termite Study
TypeHost-Associated
TaxonomyHost-Associated → Insecta → Digestive System → Unclassified → Unclassified → Termite Gut → Multi-Omic Termite Study

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
LocationFrance
CoordinatesLat. (o)48.913957Long. (o)2.485499Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000006Metagenome8944Y
F011048Metagenome296Y
F031291Metagenome183Y
F050745Metagenome145Y
F069311Metagenome124Y
F081489Metagenome114Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0132217_1001790Not Available4570Open in IMG/M
Ga0132217_1001791All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Coleoptera → Adephaga → Caraboidea → Carabidae → Trechinae → Trechini → Paraphaenops2797Open in IMG/M
Ga0132217_1027793All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera706Open in IMG/M
Ga0132217_1028405All Organisms → cellular organisms → Eukaryota → Opisthokonta997Open in IMG/M
Ga0132217_1120101Not Available634Open in IMG/M
Ga0132217_1208164All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda836Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0132217_1001790Ga0132217_10017902F069311MLVITVQTTIPVKEIDDRITAAMFFVASVLWDLKFHFGSVFKIMNLE*
Ga0132217_1001791Ga0132217_10017914F069311MLVMTVHIIKPVREIADRITAAVFFVVSFLLDFRFHFVSVFKIINLE*
Ga0132217_1027793Ga0132217_10277932F050745VEQRKRMFFKWLVLGKGGVDDVRREPADSSDNAVSVAMAQWNVEHRVFAVEQFFLETVIL
Ga0132217_1028405Ga0132217_10284052F011048VPLGSYTATEVLFPLFVAVLEGFCWTTFQLVGYALLDIIQSTKMAPFQVVFEPGE*
Ga0132217_1120101Ga0132217_11201011F031291VLPRLLTGAQKENRVTVSQDLFDRSNVALLSRFGPCGLFLGPKVEILTKRSPISDGRGDRRKFDTGPLHHPTKHVPGRVPELQITLGAVY
Ga0132217_1201529Ga0132217_12015292F000006KMDLQEVGGGRGDWMELAQDRDRWRALVGTVRDFRVP*
Ga0132217_1208164Ga0132217_12081641F081489MNAPISNPADCEVRGVIWFLQAANVRPSEFHRRFVAVYGEHVMNAASVRKWCIMFTNGRTDVHDAEKSGRPSVITDALKQKVNRIIRENRHFTISEVYEQCPEMSRTVVYEIVTEHLQYRKICERWAR
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