NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009948

3300009948: Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 30 mira



Overview

Basic Information
IMG/M Taxon OID3300009948 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114530 | Gp0149122 | Ga0131847
Sample NameCompost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 30 mira
Sequencing StatusPermanent Draft
Sequencing CenterCenter for Advanced Technologies in Genomics, Sao Paulo University
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size65120098
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral1
Not Available7
All Organisms → cellular organisms → Bacteria → Proteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCompost Microbial Communities From Sao Paulo Zoo, Brazil
TypeEngineered
TaxonomyEngineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationSao Paulo Zoo, Brazil
CoordinatesLat. (o)-23.651072Long. (o)-46.620675Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012882Metagenome / Metatranscriptome276Y
F018909Metagenome / Metatranscriptome232Y
F024195Metagenome / Metatranscriptome207Y
F059782Metagenome133Y
F078430Metagenome116N
F088555Metagenome109N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0131847_105209All Organisms → Viruses → Predicted Viral1701Open in IMG/M
Ga0131847_109193Not Available1310Open in IMG/M
Ga0131847_109498Not Available1292Open in IMG/M
Ga0131847_113782Not Available1079Open in IMG/M
Ga0131847_117392All Organisms → cellular organisms → Bacteria → Proteobacteria964Open in IMG/M
Ga0131847_132430Not Available713Open in IMG/M
Ga0131847_140591Not Available634Open in IMG/M
Ga0131847_148958Not Available566Open in IMG/M
Ga0131847_154257Not Available527Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0131847_105209Ga0131847_1052092F088555MALRMYFDETVSSIVRDDISPTLGSPDTYEGPAEGGSVERKLYLYXDNFQRTYSNVQITALNTDDDVQIHYALDQNGQPGTYQTTLQLPDGDYQTPVPIWVKVTFAPVTEPILRTDLRHWLQWLEAIAG*
Ga0131847_109193Ga0131847_1091933F059782VRVEFETARGRIVQGXGSQVXAFSVLLDIESEQLSVMERAXLAQRLTVRFAQAIAEXXGGEEIEIRRSRE*
Ga0131847_109498Ga0131847_1094982F059782VRVEFETARGRVVPXKGSQVAAFFVALEVHSEQLSVPERAELTQRLTTRIAEIIADEFGGEEXEXRRRHE*
Ga0131847_113782Ga0131847_1137823F059782VRVEFETARGRIVQGKGSQVAAFSVLLDIESEQLSVMERAELAQRLTVRFAQAIAXEFGGEEIXXRRSRE*
Ga0131847_117392Ga0131847_1173922F088555MAIRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNTDDDVQIHYALDQNGQPGAYQTTLQLPDGDYKTPVPVWVKVTFAPVTEPILRTDLRHWLQWLEAIAG*
Ga0131847_132430Ga0131847_1324301F078430MEGAALMATMLGGVALPSVYVQEMEPDWVGKLIRRWTLRTRPLTWEQFEAIEGLVREVGIARNIERAVDGTPHALGASQVALILDEGGGRTTTAMVYITAYRVVRPLSLPQRREIELQLEEA*
Ga0131847_140591Ga0131847_1405911F018909LRWVKTAIGAVIAISVIPIIAQTVAELTGAGGALEGTVAATLLDLAPLVFVAGVLAYLFTVTGDRRRN*
Ga0131847_148958Ga0131847_1489581F012882ALRKATETSFYKAPDAGCVKLVIPTAPKGVGRDEFGPLDSQTSIVVRR*
Ga0131847_154257Ga0131847_1542572F024195MGDRLFNVLGAIVTVALVTTIVSRPTXAAVIRAMGDAFAGSIRAALGQ*
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