NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009949

3300009949: Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 15 mira



Overview

Basic Information
IMG/M Taxon OID3300009949 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114530 | Gp0149118 | Ga0131846
Sample NameCompost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 15 mira
Sequencing StatusPermanent Draft
Sequencing CenterCenter for Advanced Technologies in Genomics, Sao Paulo University
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size84449027
Sequencing Scaffolds20
Novel Protein Genes20
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Desulfallaceae → Desulfallas → Desulfallas thermosapovorans1
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → Viruses → Predicted Viral1
Not Available10
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCompost Microbial Communities From Sao Paulo Zoo, Brazil
TypeEngineered
TaxonomyEngineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationSao Paulo Zoo, Brazil
CoordinatesLat. (o)-23.651072Long. (o)-46.620675Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012882Metagenome / Metatranscriptome276Y
F024195Metagenome / Metatranscriptome207Y
F036417Metagenome / Metatranscriptome170Y
F059782Metagenome133Y
F078430Metagenome116N
F088555Metagenome109N
F093744Metagenome / Metatranscriptome106Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0131846_100261All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes17241Open in IMG/M
Ga0131846_100729All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Desulfallaceae → Desulfallas → Desulfallas thermosapovorans5170Open in IMG/M
Ga0131846_103065All Organisms → cellular organisms → Bacteria → Terrabacteria group2320Open in IMG/M
Ga0131846_103351All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2228Open in IMG/M
Ga0131846_103676All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2139Open in IMG/M
Ga0131846_108218All Organisms → Viruses → Predicted Viral1515Open in IMG/M
Ga0131846_111666Not Available1304Open in IMG/M
Ga0131846_112072All Organisms → cellular organisms → Bacteria → Proteobacteria1284Open in IMG/M
Ga0131846_118582Not Available1055Open in IMG/M
Ga0131846_118791Not Available1048Open in IMG/M
Ga0131846_121575Not Available982Open in IMG/M
Ga0131846_122934Not Available954Open in IMG/M
Ga0131846_134218Not Available787Open in IMG/M
Ga0131846_135177All Organisms → cellular organisms → Bacteria → Proteobacteria776Open in IMG/M
Ga0131846_137210All Organisms → cellular organisms → Bacteria755Open in IMG/M
Ga0131846_142856Not Available704Open in IMG/M
Ga0131846_144331Not Available692Open in IMG/M
Ga0131846_150625Not Available645Open in IMG/M
Ga0131846_154835All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium617Open in IMG/M
Ga0131846_167914Not Available545Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0131846_100261Ga0131846_1002619F093744MGFSVGDRVEVNYSVDDFPGHVGIVRDIKESTLLPGKTIVICYWPFLDKEIAFFEESFDLV*
Ga0131846_100729Ga0131846_1007297F088555MAIRMYFDETVSLLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNTDDDVQIHYALDQNGQPGAYQTTLQLPDGDYKTPVPVWVKVTFSPVTEPILRTDLRHWLQWLEAIAG*
Ga0131846_103065Ga0131846_1030653F088555MYFDETVSLLVRDDISPTLGSPDTYXGPAEGGSVERKLYLYSDNFQRTYSNVQISALNADADVQIHYALDQGGXPGTYQTNLQLPDGDYQTPVPVWVKVTFAPVTEPTLRTDLRHHLQWLEAVKG*
Ga0131846_103351Ga0131846_1033516F059782VRVEFETARGRIVQGKGSQVAAFFVALEVESEQLTVPERGELLQRLTTRIVDAIAEEFGGEEIEVRRRHD*
Ga0131846_103676Ga0131846_1036763F088555MYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNTDXDVQIHYALDQGGQPGTYQTNLQLPDGDYQTPVPVWVKVTFAPTTEPTLRTDLRHHLQWLEAIAG*
Ga0131846_108218Ga0131846_1082184F088555MAIRMYFDETVSLLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNADADVQIHYALDQNGQPGTYQTNLQLPDGDYQTPVPIWVKVTFAPTTEPTLRTDLRHHLQWLEAIAG*
Ga0131846_111666Ga0131846_1116664F059782MRVEFNVARGRAVRGKGSQLAAFSVLLDIESEQLSVMERAELAQRLTARFAQAIADEFGGEEIEVRRPRE*
Ga0131846_112072Ga0131846_1120721F012882AASSCKQQPSLDALRXATETSCFKSADAVWVKLVVTTAPKGVGRDEFGPLDTQASVTVSR
Ga0131846_118582Ga0131846_1185822F059782VRVEFETARGRVVPGKGSQVAAFFVALEVESEQLTVPERGELLQRLTTRIVDAIAEEFGGEEIEIRRRHE*
Ga0131846_118791Ga0131846_1187912F059782MRVEFNVARGRAVRGXGSQLATFSVLLDIESEQLSVMERAELAQRLTARFAQAIADEFGGEEIEVRRPRE*
Ga0131846_121575Ga0131846_1215751F078430MGRAALMATMLGGVVLPSVYVQEMEPDWVGKLIRRWTLRTRPLEWSEYQAIEQMVREVGVARNIERAVDGTPHALGASQVALILDEGGGRTTETMVYI
Ga0131846_122934Ga0131846_1229341F088555MALRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNADADVQIHYALDQGGQPGTYQTTLQLPDGDYQTPVPIWVKVTFAPVTEPILRTDLRHWLQWLEAIAG*
Ga0131846_134218Ga0131846_1342182F078430MGRATLMATMLGGVVLPRVYVQESEPDWAGKPIRRWTLRTRPLTWEQYAAIEQMVREVGVARSIERAVDGTPHVLGASQVGFVLDEGGGQTTETVVYITAYRVVRPLSLPQRREIELQLEEA*
Ga0131846_135177Ga0131846_1351772F088555MALRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNADADVQIHYALDQNGQPGTYQTTLQLPDGDYQTPVPIWVKVTFAPVTEPILRTDLRHWLQWLEAIAG*
Ga0131846_137210Ga0131846_1372102F059782MRVEFETARGRVVPGKGSQVAAFFVALEVESEQLTVPERGELLQRLTTRIVDAIADEFGGEEVELRRRHE*
Ga0131846_142856Ga0131846_1428562F078430VEGAALMATMLGGVVLPGVYVQEMEGEWAGKDIRRWVLRTRPITWEQFATIEEMVREVGVARSIERAVDGTPHVLGASQVALILDEGGGRTTTAMVYITAYRVVRPLSLPXRREIXLQLEEA*
Ga0131846_144331Ga0131846_1443312F078430MGRATLMATMLGGVVLPRVYVQESEPDWAGKLIRRWTLRTRPLTWEQYAAIEQMVXEVGVARXXERAVXGTPXVLGASQVALILDEGGGRTTTAMVYXTAYRVVRPLSLPQRREIELQLEEA*
Ga0131846_150625Ga0131846_1506252F059782MRVEFNVARGRAVQGRGSQLAAFSVLLDIESEQLSVMEXAELAQRLTVRFAQAIAEEFGGEEIEIRRSRE*
Ga0131846_154835Ga0131846_1548352F036417MVYYARVPIRQLIPTVLVRLATDEGEVVFRARWNXSPLELQRSILFRLRQGTHLWFETEWGHSICFKPESVWGAVVDGR*
Ga0131846_167914Ga0131846_1679144F024195MGDRLFNVLGAIVTVALVTTIVSRPTSAAVIRAMGDAFAGSIRAALGQ*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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