NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300009962

3300009962: Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 17



Overview

Basic Information
IMG/M Taxon OID3300009962 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0120337 | Gp0151220 | Ga0133747
Sample NameHuman saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 17
Sequencing StatusPermanent Draft
Sequencing CenterAutonomous University of Barcelona
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size7410727
Sequencing Scaffolds8
Novel Protein Genes13
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Predicted Viral2
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationAlicante,Spain
CoordinatesLat. (o)38.3852246Long. (o)-0.5132249Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F027205Metagenome195N
F036281Metagenome170N
F043991Metagenome155N
F049707Metagenome146N
F071329Metagenome122N
F074985Metagenome119N
F081455Metagenome114N
F081456Metagenome114N
F081510Metagenome114N
F105377Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0133747_10027All Organisms → Viruses17318Open in IMG/M
Ga0133747_10059All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes8937Open in IMG/M
Ga0133747_10192All Organisms → cellular organisms → Bacteria3371Open in IMG/M
Ga0133747_10234All Organisms → Viruses → Predicted Viral2932Open in IMG/M
Ga0133747_10261All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2739Open in IMG/M
Ga0133747_10527All Organisms → Viruses → Predicted Viral1881Open in IMG/M
Ga0133747_13958Not Available600Open in IMG/M
Ga0133747_14222All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes578Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0133747_10027Ga0133747_100272F105377VRIPVRDFDNLPLLTPEEAFERAWEVGGPARPVFDRGYRVRGLNDWKAIETLLRQGDVEDVAIASFGLKNFEEIFDAFAMLHERGWHLWQTSANVYVGGEPRTVQAIRAHYRGD*
Ga0133747_10059Ga0133747_1005910F074985VELTDGGWYKTPRIIKGKDFLAHIHDTYASGNSMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMTQINFNRDQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0133747_10059Ga0133747_100592F018385MMAENRWDPYKELSIEKDRDPVLDDPIIYGVNVPHFTVTVYSPEGRVSKYWNARILQDQVGNCRIACPRDGKILCFNWFKWTSYMFTHDGMNELVFMPDSRRRVVSQLSFDHVPMKEVN*
Ga0133747_10059Ga0133747_100593F071329MLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVAAVKEASTHIEIED*
Ga0133747_10059Ga0133747_100595F043991MSKKNSSVIDYFDLNGDMNEEAYEFEDVKLEEYIDKRSNIKPTWVGKYSHQLHFDLADDTEVSFYKGLGIVYADINFPNGIRTILFKCRQKKNLTRFISRVLELAQGDSSNIHPDFRA*
Ga0133747_10059Ga0133747_100598F027205VASRLIVSADDILKAVKESEEFERKALAEARKRDRAEGKEPREILYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0133747_10059Ga0133747_100599F036281MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNSEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYEAKQYHVKSFMRVPGSTDLWITAEREHGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0133747_10192Ga0133747_101926F081456LGYRLFLEKGAHMFEEPPIYYILISFIFLIVFGSVAFATWLVWLTPISFMAKLVMTAIGFLLCAITVILYTISAE*
Ga0133747_10234Ga0133747_102345F105377MRDFDDLPLLTPEEAFERAWEDGGSAHPVFDRGYRVRGLNDWKAIETLLRQNDVSDITVASFGLKRFEEILDAIAMLHERGWRLWQTSANVYVDGERRTVQAIRAHCPGD*
Ga0133747_10261Ga0133747_102616F049707VVSEYRSPHNDGHDPYILIWEYGSDIRRAEFVERWTEWDETGWTVWYFRLVGGDIMTFSTREWEQKDDVNHLTTIWMKPSLYDIERKAS*
Ga0133747_10527Ga0133747_105272F081510MKLPNVKTIKAAAKTTYTTSKILTKKYAPFILLGVGLAGYGYSVYEGIKSGKKLEKTKAKYEELDQSNIPYSKKEVVMDIAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMATEEHARYRLRAKTVLDEETFKKIDAPMETKSVEVDGKEIEVDSIVPNEGDFYGRWFKYSSNYASDDPEYNEAWVREVDDLMTARISKVGMITFAEVLDALGFDVPKAALPFGWTDTDGFFLEWDTHEVWNDDKQEYEPQVYVRWKTPRNLYATTNFKDLMPKKTRKELN*
Ga0133747_13958Ga0133747_139581F081455CDGYIKINHKEKLKERFPRNVNTEEKDIPPVEEIGAETVDIIDSAEEAIQQPLQNKDSGIAVNFSQMINKPESVKTELNSVPIEGETKVNVLFPKNEHILGNYVDYDSFKKIKESNTDKVVRAVRLLNYKMADQNAAAAFGRFVSEFNPECDPNKRLQYELIRHQGREKDLVIRLSTVVNGTTKYYADIYPDLNKIDLD
Ga0133747_14222Ga0133747_142222F018385MAELINSWLPYQELSIEKDRDPVLDDEIIYGNHVKHFTLTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEVK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.