Basic Information | |
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IMG/M Taxon OID | 3300009974 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114297 | Gp0127586 | Ga0105039 |
Sample Name | Switchgrass associated microbial communities from Austin, Texas, USA - LS_119 metaG |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 26347670 |
Sequencing Scaffolds | 9 |
Novel Protein Genes | 10 |
Associated Families | 10 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Tectiliviricetes → Kalamavirales → Tectiviridae → Deltatectivirus | 1 |
Not Available | 6 |
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions |
Type | Host-Associated |
Taxonomy | Host-Associated → Plants → Phyllosphere → Leaf → Endophytes → Switchgrass Associated → Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant surface |
Location Information | ||||||||
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Location | Austin, Texas | |||||||
Coordinates | Lat. (o) | 30.387 | Long. (o) | -97.7301 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000330 | Metagenome / Metatranscriptome | 1285 | Y |
F000698 | Metagenome / Metatranscriptome | 930 | Y |
F003605 | Metagenome / Metatranscriptome | 477 | Y |
F004317 | Metagenome / Metatranscriptome | 443 | Y |
F013855 | Metagenome / Metatranscriptome | 267 | Y |
F018309 | Metagenome / Metatranscriptome | 235 | Y |
F024195 | Metagenome / Metatranscriptome | 207 | Y |
F055387 | Metagenome / Metatranscriptome | 138 | Y |
F067312 | Metagenome / Metatranscriptome | 125 | Y |
F079533 | Metagenome / Metatranscriptome | 115 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0105039_100002 | All Organisms → cellular organisms → Bacteria | 41984 | Open in IMG/M |
Ga0105039_100018 | All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Tectiliviricetes → Kalamavirales → Tectiviridae → Deltatectivirus | 13352 | Open in IMG/M |
Ga0105039_109657 | Not Available | 753 | Open in IMG/M |
Ga0105039_110952 | Not Available | 695 | Open in IMG/M |
Ga0105039_112864 | Not Available | 631 | Open in IMG/M |
Ga0105039_114257 | Not Available | 591 | Open in IMG/M |
Ga0105039_117362 | Not Available | 525 | Open in IMG/M |
Ga0105039_117518 | Not Available | 522 | Open in IMG/M |
Ga0105039_118600 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum | 503 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0105039_100002 | Ga0105039_10000222 | F003605 | MAVGDQAQAAGYPIVPDTGEEGRVRWGALEINRTRDFLALVKALIPTGKSAYRTAGGISSGTADPSGGNDGDIYFKIIE* |
Ga0105039_100018 | Ga0105039_10001815 | F024195 | MGDKVFNVVGAIVTVALVTTIVSRPNSARVIKAMGDAFSGSIRAALGR* |
Ga0105039_109657 | Ga0105039_1096571 | F018309 | NEPSWCNKCKISCHDVLLEFFAINALDPHHWTIKTCFGAFVPVWVHLEPFQYYTKLKAKRDKLVQLMQQFVPRCFVRIFCNERSRSTPLDPNLMFWCVSFRLGAFGTVSLLHKTCYKTCQTGAINAKVHATMSC* |
Ga0105039_110952 | Ga0105039_1109521 | F079533 | VSTQLVLNKYNTNYEALRLADSTALAFKCWQNFIKAIYYKLMNYH* |
Ga0105039_112864 | Ga0105039_1128641 | F013855 | FSPFCIEFRAVTKLSQMHPNTMKCNKR*VWCPMGSIGCVRCENIRRDFVVRTFALIAPVRPILHRVYCRNKMLPNAPKHYETHHNMSLGSDAMDWADLLQRILLQLCGLNFCFNCNSSA*FEPSIVNQRNGPKCTQTQRNKTKQDFRFQWGWISCIRCEKFGNDFVA*TFALIAPVQPISHRVSCSNEMVRNAPKHYETQQKLSLGSNG |
Ga0105039_114257 | Ga0105039_1142571 | F004317 | VIALNYTGKVFGALSPYLSPYRDERQINLSYMVLLDMWNMFG* |
Ga0105039_117020 | Ga0105039_1170201 | F067312 | AELVQKFVPRSRVLSFRIKHTRFSPLGPKLIFWCVSYYLGTFGTVWLPYKTRCKTGRSGAKVRAMKSCQIFLQRTYPSTPLNPKLMFHSVSYYFGAFGTVRLHYKLSAKWAKLLQKFVPRSRVGIFGNERTRSTPLDSKLMFWCVSYYWDAFGTVWLNYKTQCKMGRSGGKVRATK |
Ga0105039_117362 | Ga0105039_1173622 | F000330 | LSLGPNGVDQVSSLRQILPQLRGTNFCTKLARFPLSFVRQPNGPEYTQMGRNAPKRQFRDKWGGSGAFVAKNSDATSWLELLH* |
Ga0105039_117518 | Ga0105039_1175181 | F000698 | MVCFRTVWVHSGPFGCLTKLDAKRAEQVQKFVPRSRVGIFRNERTRSTPLDPKLTFWCVRTIWEHLGLFGSLTKLGAKRAELVQKFVSRKRVGIFHKERTRSTPLDPKLMFWCVSYYLVAFGTVWSHYKTRCKTGRTS |
Ga0105039_118600 | Ga0105039_1186002 | F055387 | MLDIRAIIAQKPKKKLYSSMAAMGFVHKDVRGRINHAHTIKEVMAIQILSILTNLP* |
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