NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009979

3300009979: Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG



Overview

Basic Information
IMG/M Taxon OID3300009979 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0114297 | Gp0127579 | Ga0105032
Sample NameSwitchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size32258315
Sequencing Scaffolds8
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Tectiliviricetes → Kalamavirales → Tectiviridae → Deltatectivirus1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
Not Available6

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSwitchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions
TypeHost-Associated
TaxonomyHost-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated → Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Plant → Plant surface

Location Information
LocationAustin, Texas
CoordinatesLat. (o)30.387Long. (o)-97.7301Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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