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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300010011 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0120356 | Gp0147050 | Ga0133925 |
| Sample Name | Beer lees fermenting microbial communities from anaerobic reactor in biotech lab of the University of Hong Kong, China - sample2_75d |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Beijing Genomics Institute (BGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 92889813 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 4 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium | 1 |
| Not Available | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Draft Genomes Reconstructed From Beer Lees Fermenting Consortia |
| Type | Engineered |
| Taxonomy | Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Reactor → Draft Genomes Reconstructed From Beer Lees Fermenting Consortia |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | na → na → na |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Hong Kong | |||||||
| Coordinates | Lat. (o) | 22.3964 | Long. (o) | 114.1095 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F075996 | Metagenome / Metatranscriptome | 118 | N |
| F088753 | Metagenome / Metatranscriptome | 109 | N |
| F105007 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0133925_101117 | All Organisms → cellular organisms → Bacteria | 33019 | Open in IMG/M |
| Ga0133925_104604 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium | 7150 | Open in IMG/M |
| Ga0133925_105870 | Not Available | 5335 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0133925_101117 | Ga0133925_1011179 | F075996 | MLNSATGQAVGILLPFWSYIPTDRISPKGLLYPVSQVMKEGRLFRFVMLVGEPEEEVSLAGKDFFWQDTDRMYRPKYCAIDITADFKGRICTFTGLYARHDGLYVNGKRAGSFEDTRDIFVHYGLGEVWNLITGDIRPSCCVYKYGRLFVPETEVCLGLLSEKAQFPKGYDMKDLGRVERLLEDAGVFKIPEEISLAEVEEKLSKFSEIEKILDEFSAQDEETLLR* |
| Ga0133925_104604 | Ga0133925_10460414 | F075996 | MDMINSATGQAVGILLPFWSYLPTNKVSPKGFLYPVSQVMKEGDVLRFVVLIGDAEDEAPLAGKDFFWQDVKRMFRPKFFCADMTVLFRDRMCNFTALYARKGGLFFNGRRAGDFADAGEVFAHYGLQEVWNLITGDIKPSCCVYKYGRLFVPETEVCLGLVSEKANFPKGYDMKDLARVEKLLEEAGAYKIPEEISLAEVEKKLSKFAEIEKFLDEFSSDRETLLR* |
| Ga0133925_105870 | Ga0133925_1058702 | F088753 | MTECGRILQELEMLKKTNDERLARRLSDWYGFVLSELTSGRVGDFIRSVPADFVSLPFNGRKVEKLIQGCIRTLFEMAEDGRIPFETTAYMAESLRTGRKFWLRHAGQICSKKLGHALPVVLHKETITEMILREAKLLALSKVAVVIKLYCRIPGEFYPAVCCLSSDCDIAKRALRNITKDFVRDRMASFPKVDLKKDFFYLESGYGFDENGIIFINKGRVYYRTNDGTHELPDADLDNREGIYMKIASAVAKAIEYEVATEFEKEKYARDDDDWVLEIR* |
| Ga0133925_108013 | Ga0133925_1080131 | F105007 | MEDADVLEGIHRKFCETGDISYRESDAVFRIAQRFFSRKSYLSLKDVVPKWYEKVKREILNGRWGVFVHTVPLGSTGDFYRNLGTTGDPINLASCLTEINYIFREMKRPVCINLVFLRDKDRLCTLGDGIPKTLLVKRFDKVNNKNAFRFLRADTLRRLGNFVCIDLEGIKAREFDIACAYRYEMEEKNCAVDRLAQVYAAVFLELESAGIKFLTCSSRAGYAYGYLDELSVFADEKDAERIEGALKTADCIAESLKGAVKEFSVRDFYLFSPAKDGEPSMNDPYFRKLVKSHISQFFPEKRKDAVEEEEWVDMIR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |