Sample 3300010063

3300010063: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_2_4_2 metaT (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300010063 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0110119 \| Gp0146838 \| Ga0127431
Sample Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_2_4_2 metaT (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	19582543
Sequencing Scaffolds	72
Novel Protein Genes	76
Associated Families	59

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	55
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Ophiocordycipitaceae → Ophiocordyceps → Ophiocordyceps sinensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae → Leadbetterella → Leadbetterella byssophila	1
All Organisms → cellular organisms → Archaea	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Listeriaceae → Listeria → Listeria monocytogenes	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	grassland biome → biosphere reserve → grassland soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	USA: Angelo Coastal Reserve, California
Coordinates	Lat. (^o)	39.7181	Long. (^o)	-123.6527	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000611	Metagenome / Metatranscriptome	987	Y
F000734	Metagenome / Metatranscriptome	915	Y
F001418	Metagenome / Metatranscriptome	698	Y
F001474	Metagenome / Metatranscriptome	688	Y
F001679	Metagenome / Metatranscriptome	653	Y
F001975	Metagenome / Metatranscriptome	609	Y
F002557	Metagenome / Metatranscriptome	548	Y
F002654	Metagenome / Metatranscriptome	539	Y
F003269	Metagenome / Metatranscriptome	496	Y
F003497	Metagenome / Metatranscriptome	483	Y
F004925	Metagenome / Metatranscriptome	418	Y
F007777	Metagenome / Metatranscriptome	345	Y
F007847	Metagenome / Metatranscriptome	343	Y
F009335	Metagenome / Metatranscriptome	319	Y
F011566	Metagenome / Metatranscriptome	289	Y
F011643	Metagenome / Metatranscriptome	288	Y
F012439	Metagenome / Metatranscriptome	280	Y
F013747	Metagenome / Metatranscriptome	268	N
F013832	Metagenome / Metatranscriptome	268	Y
F014243	Metagenome / Metatranscriptome	264	Y
F015442	Metagenome / Metatranscriptome	254	Y
F016001	Metagenome / Metatranscriptome	250	Y
F016975	Metagenome / Metatranscriptome	243	Y
F018518	Metagenome / Metatranscriptome	234	Y
F018692	Metagenome / Metatranscriptome	233	Y
F020585	Metagenome / Metatranscriptome	223	N
F024104	Metagenome / Metatranscriptome	207	Y
F024980	Metagenome / Metatranscriptome	203	Y
F027759	Metagenome / Metatranscriptome	193	Y
F027762	Metagenome / Metatranscriptome	193	Y
F029372	Metagenome / Metatranscriptome	188	Y
F030702	Metagenome / Metatranscriptome	184	Y
F032115	Metagenome / Metatranscriptome	180	N
F032287	Metagenome / Metatranscriptome	180	Y
F032479	Metagenome / Metatranscriptome	180	Y
F033328	Metagenome / Metatranscriptome	177	Y
F035420	Metagenome / Metatranscriptome	172	Y
F036359	Metagenome / Metatranscriptome	170	Y
F037234	Metagenome / Metatranscriptome	168	Y
F040607	Metagenome / Metatranscriptome	161	Y
F044917	Metagenome / Metatranscriptome	153	Y
F046349	Metagenome / Metatranscriptome	151	Y
F056193	Metagenome / Metatranscriptome	138	N
F056792	Metagenome / Metatranscriptome	137	Y
F057921	Metagenome / Metatranscriptome	135	N
F063173	Metagenome / Metatranscriptome	130	Y
F065493	Metagenome / Metatranscriptome	127	Y
F067356	Metagenome / Metatranscriptome	125	Y
F070750	Metagenome / Metatranscriptome	122	N
F070926	Metagenome / Metatranscriptome	122	N
F072135	Metagenome / Metatranscriptome	121	Y
F075940	Metagenome / Metatranscriptome	118	Y
F076940	Metagenome / Metatranscriptome	117	Y
F079648	Metagenome / Metatranscriptome	115	N
F080065	Metagenome / Metatranscriptome	115	Y
F080934	Metagenome / Metatranscriptome	114	Y
F083530	Metagenome / Metatranscriptome	112	Y
F087250	Metagenome / Metatranscriptome	110	Y
F102579	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0127431_100311	Not Available	520	Open in IMG/M
Ga0127431_100410	Not Available	553	Open in IMG/M
Ga0127431_101017	Not Available	645	Open in IMG/M
Ga0127431_101780	Not Available	572	Open in IMG/M
Ga0127431_102272	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Ophiocordycipitaceae → Ophiocordyceps → Ophiocordyceps sinensis	1158	Open in IMG/M
Ga0127431_102516	Not Available	644	Open in IMG/M
Ga0127431_103710	Not Available	552	Open in IMG/M
Ga0127431_105084	Not Available	790	Open in IMG/M
Ga0127431_107598	Not Available	699	Open in IMG/M
Ga0127431_108209	Not Available	567	Open in IMG/M
Ga0127431_108814	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae → Leadbetterella → Leadbetterella byssophila	593	Open in IMG/M
Ga0127431_109069	Not Available	653	Open in IMG/M
Ga0127431_109765	Not Available	698	Open in IMG/M
Ga0127431_110181	Not Available	563	Open in IMG/M
Ga0127431_111980	All Organisms → cellular organisms → Archaea	546	Open in IMG/M
Ga0127431_112710	Not Available	564	Open in IMG/M
Ga0127431_112987	Not Available	889	Open in IMG/M
Ga0127431_113295	Not Available	694	Open in IMG/M
Ga0127431_113678	Not Available	500	Open in IMG/M
Ga0127431_114404	Not Available	605	Open in IMG/M
Ga0127431_114662	Not Available	751	Open in IMG/M
Ga0127431_115227	Not Available	571	Open in IMG/M
Ga0127431_115303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Listeriaceae → Listeria → Listeria monocytogenes	505	Open in IMG/M
Ga0127431_116078	Not Available	802	Open in IMG/M
Ga0127431_116084	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	589	Open in IMG/M
Ga0127431_117074	Not Available	557	Open in IMG/M
Ga0127431_117770	Not Available	552	Open in IMG/M
Ga0127431_118226	Not Available	572	Open in IMG/M
Ga0127431_119328	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	566	Open in IMG/M
Ga0127431_120014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	651	Open in IMG/M
Ga0127431_120240	Not Available	555	Open in IMG/M
Ga0127431_120418	Not Available	787	Open in IMG/M
Ga0127431_120449	All Organisms → cellular organisms → Archaea	559	Open in IMG/M
Ga0127431_121078	Not Available	508	Open in IMG/M
Ga0127431_121387	Not Available	793	Open in IMG/M
Ga0127431_121483	Not Available	571	Open in IMG/M
Ga0127431_122247	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	561	Open in IMG/M
Ga0127431_122484	Not Available	644	Open in IMG/M
Ga0127431_122872	Not Available	531	Open in IMG/M
Ga0127431_123371	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	773	Open in IMG/M
Ga0127431_123394	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
Ga0127431_124087	Not Available	518	Open in IMG/M
Ga0127431_124682	Not Available	529	Open in IMG/M
Ga0127431_124839	Not Available	596	Open in IMG/M
Ga0127431_124863	Not Available	560	Open in IMG/M
Ga0127431_126682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	627	Open in IMG/M
Ga0127431_127715	Not Available	881	Open in IMG/M
Ga0127431_129632	All Organisms → cellular organisms → Archaea	573	Open in IMG/M
Ga0127431_130784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	635	Open in IMG/M
Ga0127431_130893	Not Available	564	Open in IMG/M
Ga0127431_133016	Not Available	511	Open in IMG/M
Ga0127431_133131	Not Available	637	Open in IMG/M
Ga0127431_133325	All Organisms → cellular organisms → Archaea	558	Open in IMG/M
Ga0127431_133537	Not Available	764	Open in IMG/M
Ga0127431_134962	Not Available	682	Open in IMG/M
Ga0127431_136099	Not Available	534	Open in IMG/M
Ga0127431_136930	Not Available	647	Open in IMG/M
Ga0127431_137291	Not Available	528	Open in IMG/M
Ga0127431_137558	Not Available	559	Open in IMG/M
Ga0127431_139988	Not Available	573	Open in IMG/M
Ga0127431_141277	Not Available	522	Open in IMG/M
Ga0127431_141499	Not Available	567	Open in IMG/M
Ga0127431_142170	Not Available	500	Open in IMG/M
Ga0127431_142692	Not Available	566	Open in IMG/M
Ga0127431_143833	Not Available	618	Open in IMG/M
Ga0127431_145521	Not Available	680	Open in IMG/M
Ga0127431_145900	Not Available	727	Open in IMG/M
Ga0127431_146045	Not Available	669	Open in IMG/M
Ga0127431_146629	Not Available	924	Open in IMG/M
Ga0127431_147608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	530	Open in IMG/M
Ga0127431_147978	Not Available	578	Open in IMG/M
Ga0127431_148437	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0127431_100311	Ga0127431_1003111	F065493	FCLSAPPKLGFPCLRISASWLAAAILSRPGPASRNGLSLACNGFRFHEPHSRVNGPGLLLSRLATSLAARSTLLLHHRTPVCPGFGRFVASGPLQFRLRLRLAASPVSTPLWGFTSPPDQSVQPVSLPVSPPSESARSPLAPRCRSFFKCGCGSSFLVRYVSGGLLFLKPLG
Ga0127431_100410	Ga0127431_1004101	F102579	RRRPLMGLLALQSIVGSRPARTLGSPHPQAFPFPVSLAVFLRPPSPTAFEVGSSSRELSLPCRVLPIRARSVAAVRRRRLPGGFVPLRDINRRRHIWSASPTSQTVPSSAFRTPSTVSSATGLAGLFHPAATFRVRSPGGFPPVKRYRLVDGPCPRAVSIELTAGRLPNRVRESEPRLQGLVPH
Ga0127431_101017	Ga0127431_1010171	F087250	GSQGPGAEAEFTSSSGGVRAPPVNAKKELGDEVR*
Ga0127431_101780	Ga0127431_1017801	F007847	LKQAEKPHSKFSDRKTLDGPATRPKTPLAVENGVG
Ga0127431_102272	Ga0127431_1022721	F037234	DHPSNEQCLNLDPKPGDLTLIRIIKVRTGYRSIDIRRIMVS*
Ga0127431_102516	Ga0127431_1025161	F032115	SLGLMVAPPACEPGQDTFVTLLPRLDQLAPGRPLRLAVRWPGATGLTSYLSGCLSLTSQRCVLNTSPTFWKFFGPGLDPLSFPDPETLFVRLSASLVRRVSRGNRQSTPLRAGAQ*
Ga0127431_103710	Ga0127431_1037102	F018692	VCVRLLTDQITVVASLAPRQIDRGDVGWPYTRRQKQGSTEAGPVGKEEHD
Ga0127431_104856	Ga0127431_1048561	F016975	LQAGGATTSPSELKSLTQKFCDRKAQNGPATRPKTPLAVENSVGKLAASARLMPARERER
Ga0127431_105084	Ga0127431_1050841	F033328	RGRRKTNARMSPKALWIIPGDWAKVESGWLAQPLLKFDRKVETAEA*
Ga0127431_107598	Ga0127431_1075983	F007847	LKQAEKPHSKFSDRKALDGPATRPKTPLAVENGVGKPAA
Ga0127431_108209	Ga0127431_1082091	F080934	LPLCSPCRDFRPARINALRHASRLTPNRNPLLGTAFHSLEKTARFRATFPRSMFLAYPFGSSSSLSRTRSIKPLIHAYRLAPDRANSTRQTRCSGPSERPRPFFRSPLPFGAFWTLPDQSGGLNTNREVHQIETPDFFRSPLPAVLIEPATDQCSSLATSRLAYCLTN
Ga0127431_108814	Ga0127431_1088141	F000611	NFPTYVFATVNSGRATKVVEELKRNSQIDIIAPVTGRWDLVLRLKPNTPHNIYQTVKEIREISDVRTTDTHTGFDGMQPTKKLESQMALGVSVLTCEHNTSENVIKQLSNIPGFIEASTVPGQFDIVALWQARTSEEIMKTSVERVTNLPGVFKSETLLAYAPFFKA*
Ga0127431_109069	Ga0127431_1090691	F018518	EVPLRRKDNKMKLPLPLELTKPVLLANDLNTEVRAQMCSGTRSSQKSQSLNVLGILQVDATDVQVDDVIA*
Ga0127431_109765	Ga0127431_1097651	F009335	MVKTRSKNHKRVFTRFACWRLQTSVEASLEASLKILPPQGAGRPCYEAE
Ga0127431_110181	Ga0127431_1101811	F046349	TASPSAGMHGTEHCRQVSRADSRLLPATAFQRQRINASKSACSYFLSGAGLSQRPFARSERLSAHRTTIPRSTFLACSFETLLNCLQAR*
Ga0127431_111980	Ga0127431_1119801	F000611	QTNMNFPTYVFATVNPGRSTNVVEELKRNSQIDIIAPVTGRYDLVLRLKPNTPHNIYQTVKEIRNISDVVTTDTHTGFDGIQPTKKFENQMALGVSLLTCEHTTSENVIKQLSTIPGFVEASTVPGQFDIVALWQARTSEDIVKTSVERVSQLDGIFKSETLLAYAPFFKA*
Ga0127431_112710	Ga0127431_1127101	F040607	ISSLALRGHAPHRASQSIVPDASPVNSPTGVFATRRINAFRHAACCVRSGPVARNSLSLACNDCSLSEPPSQGQRSRPATSLPTAGSHCPFGFPLHYRFRFAPASGGFLASIPLQHLLAVRMTAPAVSTPLWDCYLPPDQSVQPPRLPLGPPSESARFPLAPRSHSISRVGFGSSFLVRYVSGGLLF
Ga0127431_112987	Ga0127431_1129871	F012439	VLRSNLATRSDSRRAPPLGSSSLIATSASGVHHSAGNPDPAVTFRPRRFSRPRRFPPPPAFAGLFHPAATSRVCPSGVCPSLRSRTGFPRPIHALLALNADTCDQRPRPRFQGFAPRFECGVGRDGLGLDRSAPLVGFSSSGCSLRATWECLHIPSALDLRRQEPLTVGHRRLGVARIGLPGIRLPTRSSFLA*
Ga0127431_113295	Ga0127431_1132951	F079648	MRRSAGAPLTRFSATLRISVPVGRQDQQTIKASWSFVAFLPFRTATRLSSPPGPVAIKARARCVVFPTRLERRTGIRAGYPVYSPLMPLAEARLQGVPPPVKRRSRRNACLPGCSLPRGFPSPASCSGFPEDPFTALGLRQNTVGPGPQGLAPLTSWLPPLAG*
Ga0127431_113298	Ga0127431_1132981	F080065	IRFLNWWQSLHPIMASGEGTIVLLKVQADWPRWLAVIQTKANHNHVWPYIKPTLDDREVRQELREPTPPVAKTFSATPNAEPEPTIESLTAEQLKRYEMAYKVYKDNLKKWERKQATINDIDDYIMRTTGTYWSTIEKIQGVKERLKALEDHVAPSTYAREQDVLARYESIRRSAKATQ
Ga0127431_113678	Ga0127431_1136781	F044917	ASLVGRSEPGTLIRGRRHLKMESGHGERREIGRSAQVGFQKAELVEHYDPEGHKNPQRGVEAREAFWDIGLERIR*
Ga0127431_114404	Ga0127431_1144041	F013832	AVSSALGLAGATAVSAATHVRPHATTVCDNNPGTVSPRCTNISNLMLNQGNGPVFIQNATQKGVKAGSLYQNRIINLRQASNTRTNEDFIIRQVGVLGQLCGTGGVNSIDPTSYACLNYPDFYPVFQGQFAPNSNETGFCVGAISATEGFKARLERCGSPRTFWVGDLAASIQVTIVLNNAPFLLFYFPLEFAADTSASNP
Ga0127431_114662	Ga0127431_1146621	F027759	ESQIEAARFTDNPGRPGKSQVRLVDLAPQNRGASCGEAKFTSSSGGVRTPSNANEELGSEKRLETASS*
Ga0127431_115227	Ga0127431_1152271	F040607	DLISSLALRGHAPHRASQSIVPCAPPVNSPTDVFTTRRINAFRHAACCYRSGPVARNGLSLACNSCSFSEPPFQGQRSWPATSRPTAWSHCPFGFRLRHRFRFAPDNGSIFASIPSQRFHTIRATASAVSTPLRDCYVPPDQSVQPYRLPLDPPSGSARFPLAPRSLFYS*
Ga0127431_115303	Ga0127431_1153031	F056792	APAMATLEMVPLRSTMPFTGRVTLRYALPTVKIDVPADLTIDKGAARLPRITTTPQVEEPQDEAALETPARKGGEAR*
Ga0127431_116078	Ga0127431_1160781	F032115	WECATLSFPVAGIRRPFGCRLPDAILHGQRSSFFRPRSRAVQRLALAEFRVRPLSSLGLMVAPPACEPGQDTFVTLLPRLDQLAPGRPPRLAVRWPGATGLTSYLSGCLSLTSQRSVFDTSPTFWKFFGPGLDPHCFPVSEALFVRLSASLLRRVSRRNRQSTPLRAGAQ*
Ga0127431_116084	Ga0127431_1160841	F024104	VAAVSSPVARCTSTTRFGLPRPAPPLPSGTFASLGIKAFNAVCCQPVRLTNPPDFLSLPVARSNESEDNGSSFQVRYVSIGL
Ga0127431_117074	Ga0127431_1170741	F007777	LRGSVARPVLGVVERKAASRSGLLPEMEADAHQRTDPQLAKTSGGEQRAHVSPNSDATFRPRMPVGEQTA
Ga0127431_117770	Ga0127431_1177701	F002557	VLIHSSNRLPSGNCDWLRPETLLSYLTQFGTVSHRSSSLSPFFAFTSEARTSPEELVNPASAPEP
Ga0127431_118226	Ga0127431_1182261	F015442	VSGQSLRASERSLRETGSGQVVRAGGLGSVNPQSSKDGSGESTRIRPGILFAMLSAECAGVGQGCESD
Ga0127431_119328	Ga0127431_1193282	F072135	MTVTVNVHWPGHPSRVMLSVRVKEPAAPAVTLTDAPAVEPLMVPFPLIVQLCVTVPPAGLTAEV
Ga0127431_120014	Ga0127431_1200141	F036359	LFSNVSSARYRKLGFYQRHDGVDIMKVLRLGENAKLKHKDADGVALINQVIIICSA*
Ga0127431_120240	Ga0127431_1202401	F016001	VFSRRLDPIPSWACLLQVFVLDAVEAPSRLLTLVALMATLSSHCHHRPSAFRHRAWLVSLETAYLLEVCDLPAISSCPEISDEVRRSASTELPRLP
Ga0127431_120418	Ga0127431_1204181	F004925	TKESLLNVSRIIPGDWGKAESGWLAWPLSSRTARFGSGGRIHQFLWQRSRAVSNAKQELGGEER*
Ga0127431_120449	Ga0127431_1204491	F000611	KKTTMQTNMNFPTYVFATVNSGRATKVVEELKRNSQIDIIAPVTGRYDLVLRLKPNTPHNIYQTVKEIREISDVRTTDTHTGFDGMQPSKKLESQMALGVSVLTCEHNTSENVIKQLSNIPGFIEATTVPGQFDIVALWQAKTSEEIVKNTVERVTTLPGVFKSETLLAYAPFFKA*
Ga0127431_121078	Ga0127431_1210781	F011643	QTRRLMRSTARGHDSAGETRYGSAVRDNPLKGKPWTWLRDETSPQRSEAEQTLEGVRNAEEGT*
Ga0127431_121387	Ga0127431_1213871	F056193	LRFRSPSEVHRSTPAPSRGPEGPHVGRCFLSWALVPYDTSGTTDPRFTGLPTPLRATSGVWVPPSRLPPSSLPTPFGAGASLGFILQGVLLATIGTPSEAPCPLGVSRVDSPHPHGERADAATFRALIPSRARSAIPDPEGSGAPMPSWVSTLQSVPSPRPSPPLRIAGDPLARVGRFDVPARLRLRVFRLGEIGCPLSGMPALLGFFTFRPSRHRGDRGGGRAHGFTSRLARVAGGANRSEPPRITNPAT
Ga0127431_121483	Ga0127431_1214831	F011566	DFQLCSPPACTALNTANRIAGCFVSRLPDNWLLQLPDQCFKTHRSLYSCSGPDARNGLSLARNGCSFRSLHSEVNVPGLLLRFQLAASAARSTVQLCCPIRLAPVWAASLLLARCSLHGSFDLPRFQSPLPLGTFISRRIKAFNWICCLSARLPNPPDFLSLPAAGFYY*
Ga0127431_122247	Ga0127431_1222471	F002654	TFNDKVVCQKGNSPEQVFKVPKFLLSEIKEVSKLYNQEIGLEAAIF*
Ga0127431_122484	Ga0127431_1224841	F002557	VLIHSSNRLPSGNCDSLRSETILSYLTRFGTVSHRSLSLSPFFAFTDDARTSPEELVNLASALEP
Ga0127431_122872	Ga0127431_1228721	F000734	VKTFRKSGDITNDTAVLKMKGNLRVKRPDPWHWANAPLKAAAVPALSGEDADNK*
Ga0127431_123371	Ga0127431_1233712	F014243	MKLAVEELEQRIAPSVTGTGGYEGQPGHQCSAGQNPSGSANPEGTANPEGSANPH*
Ga0127431_123394	Ga0127431_1233941	F001679	ATKGVWGMSGRQEAMKGVEDCDKPGGTVKRVLIPGCPNQRMLNP*
Ga0127431_124087	Ga0127431_1240872	F029372	MHLTSANVWYLAVVNTPIGRLSWKMQSRRYSDGAYGEKECNFLDIGCRPVISPTAYLGPGRSGLSSTCL
Ga0127431_124682	Ga0127431_1246821	F003269	VKTRIRIRRRVLTRFANRWRNHQFKQAEKPHSKSSRGNALDGPATRPKTPLAVENSVGKL
Ga0127431_124839	Ga0127431_1248391	F032479	MTHQWYYYHKAYSDRTAFVWDVGTVHILPLRMVEALASERVPDLILSYGFTHKMQRKIPPSSIHSHGKSAPLLL*
Ga0127431_124863	Ga0127431_1248631	F076940	RFPALLSAGMHRTEQRNRKCRTFRLLAPRLAFSPPAGSMPPGTPRAAFDQDRSLVTAFRSPVTVAPSRSHHPGVNVSSLLLRDQPLVCAARSDLPLHHRYRFAPASGDLVASIPLQRLRAARVTAPAISTPLQDCYILPDQSVQPLRPPLGPPSESARFPLAPWCRLFLGLAPDHRSWFATFPGAC
Ga0127431_126682	Ga0127431_1266821	F067356	TTVGITSAKLTGSGPAVLEGVSGSEISCENQVEKAGNGEYGPGDQVKNVIGEFSGNCETSGFKCKSTGQNEGEIFTKKLHGEPGIVKKVLKEEKNEDGNDLRAETGTELAAFTCGPVAVKVTGGVVVAVKSEGKLKTNKMLNKVLVEFLAEKPGKQIPEKWTPNGGGISNEKHEEITEHLFGDVGKGPEASGQSLKTVQKSGTIKVEL
Ga0127431_127715	Ga0127431_1277151	F012439	MALHPPASFPPPPEYCGLRPASRSEDRKAPPLGSTSLIAASAGSVHHSAGSPDPAVKFRPRRFSRPRRFAPPPAFAGLFHPAATSRVCPSGVCPSPRSRTGFPPPRHALLPLNAGTFDQLPRPRLQGLAPRAECGAGRGGLDPGRSAPLMGFCSPGSSPRATWGRFHVPSALDLHRDEPTAAGPRRFAVARIGLPEIRLPTRSSFLA*
Ga0127431_129632	Ga0127431_1296321	F000611	EKPTMQTNMNFPTYVFATVNPGRSTNVVEELKRNSQIDIIAPVTGRYDLVLRLKPNTPHNIYQTVKEIREISDVRTTDTHTGFDGITPSKKLENQMALGFSLLNCEHTTSEQVIKQLSSIPGFVEASTVPGQFDIVALWQARTSEEIVKTSVERVSHLDGIFKSETVLAYTPVFKA*
Ga0127431_130784	Ga0127431_1307841	F001975	TMASTSTSTQQELQDQFLSIVSKSQEMALDAIKSMVDTVQTITPKIPAVDVPFADRLPKPQDVVASGYDFAQKLLSSQRKFADEVVKAAAPLLPGNGDSK*
Ga0127431_130893	Ga0127431_1308931	F057921	DPSAACSPTGMHGQNVASGDGVTLSPLLPAAGFDRLRIDALVRVR*
Ga0127431_133016	Ga0127431_1330161	F015442	LTSEWWSDAGQSLRVSERSLREPDSGQEVGAGGLGSVNPWASKDGCGESTRIRSRNLFAKLSAEYAGGG
Ga0127431_133131	Ga0127431_1331312	F032287	VGPRKDPQDTERPAERQAARFRQEKIRRGTSMSKGCDETVGDTSGDNPDPETSARSRGQAARKGGWERGRAHEETRSPTRRKTGDG
Ga0127431_133325	Ga0127431_1333251	F013747	MTDSTSNKGTWGAFTPVMPAFVRLVAGVIVLVILEAVILGFPGIGYNITGTQLSVANIAVFMIGLIVCFIVLKFGTQLANAASDAYKSYRAWTPLLAYFFQIVAIGILYAVTNPIAQPYFTSQPWAFPLIFLLIALIPTLKVVVNIVHGLEGGSSSSTKHAQSQNY*
Ga0127431_133537	Ga0127431_1335371	F056193	PSRGPEGPHVGRCFLPWALVPHDTSGTTDPRSAGRPSPAACHVRGLGTPIAASTVVPPDAFRCRSVLGFTLQGLLLATIGTPFGAPSPRGVSRVDSPHPHGERADAAAFRASIPSSSSFCRSRSRRTRRVDAFLGLTLQSTLSPRPSPPLRFAGDPLARVGRFDVPARLRHRVFRLEEIGCPLSGVPALMGFLTLRPSRHRGGRGGGRAHGFTSRLARVAGGANRSEPPRITNPATAFAAARYRRPSVNGCLPL
Ga0127431_133757	Ga0127431_1337571	F070926	MTRCFSARSSDLGTAFHSPAAIVLFREPPRQDCRSWPIPSIQLRTLPQARSVWSFPPRPLLADGVGSALPTRCLIPDPQLPDVHRLPLPFRTFQSLRLKALYRRQSLGKLTLADSPIFLRSPTAPIIANRTRCRIIVPDPLPSTRLTA
Ga0127431_134962	Ga0127431_1349621	F012439	SLELPASSRVLRPARCSSCLAGPRDPADGPKSASLGVLSLIAASTTGVHHSAGNPNPAVTFRPRRFSRPRRFAPPAAFAGLFHPAATSRVCPSGVCPSPRSRTGFPRPCHALLPLNATACDQRLRPRLQGVAPRRECGVGRNGLGLDRSAPLVGFSSSGCSPGATWECLHIPSALGLDREEPLAVGPRRLAVARMGLPGFRLPTRSSFLT*
Ga0127431_136099	Ga0127431_1360991	F011643	ETRYGSAARDKPLKGKPWTWQRDETSPRRQVAEQTVEDVRNVEDGT*
Ga0127431_136930	Ga0127431_1369301	F075940	MKNEILLNVEELEERIAPSATNASGTGKHHGSTPEVPSGAHPQPNPNPNSH*
Ga0127431_137291	Ga0127431_1372911	F001418	GSGAEAGFTSSSGEVRASLVNAKKGLSDEERLETVPNRVK*
Ga0127431_137558	Ga0127431_1375581	F024980	NVSKAGSYLDGKPERDNSMTCKSLIGRLGSYAVYG*
Ga0127431_139988	Ga0127431_1399881	F003497	PLNSPLPDRHARPKHGSQRSGDGTLLLPVTAFIRLRISAPEPIRLFYLLEAFVSEQSFARPQRLFSFENHRGEVKAPDLSLRRNSELFFQPVRPCAPTLGVVHHASGGVHRTKPVAVSRAQNSQTSIQPSLPFRTFVPPDRSAQSAACSEKPTLVPGPFSLRSPKASITF*
Ga0127431_141277	Ga0127431_1412771	F011643	YGSAVRDNPLKGKPWTWQRGEINPQRLEAEQTLEVVRNGEEGT*
Ga0127431_141499	Ga0127431_1414991	F070750	MHGTEHRIQDSRALRLSAPQQPFSPATGSMPPGTPLAFPEQDRPLVTAFRSPRTIPALAGSIPGSTFPACYFASSPAAFPARSAFPLRNPCPVRPGRGRFHASDPLQFPPLASPATLPAFAPRRDSYFHPDRSLTKFAANPARLPNPPDFLSLPATVSIARFRLRIIVPGPLRFRRLAV
Ga0127431_142170	Ga0127431_1421701	F030702	MSALDTPIERRTVLKGFLIAGPTLAVAARIGFASGADAWPTKTDELPDIQDFTDIFVA
Ga0127431_142692	Ga0127431_1426921	F076940	MHRIEHRNRPHGTLRLSTPQRAFSPPAGSMPQGTPPAALDRGRSLVTAFRSPVTAASSRSVHPGVKAPGLLLRFLPLVHAARSDFSLHHRYRFAPASGDFVASIPLQRLRAVRTTAPAISTPLQDSCILPDQSVQSPRLPLGPPSESARLPLPPRGRSIARYGAGSSFLARYVSGGLLF
Ga0127431_143833	Ga0127431_1438331	F083530	KQMRKIYENLNRALIKKLEVLPNVFEFSTEKYGIHEYAAIYGIEKVLRRTKSTKLLKSAPNYYLERQHKRLVSLAASGQVAGFIYLSQIIIQKSKSYRILSLNRTIKDWFILPIRNLRKIWRELNFICNNLSSDLRFKRVWIDKKPGDYARPLGVPTPAWRCYSYQWMDQIEKFQKARGNLATWQHGGRSGVGVLSCYKQLIPRL
Ga0127431_145521	Ga0127431_1455211	F016001	VWESAIETTVFSRRLDPIPSWASLLQVFALDAVEAPSRPLPLVALSATLSSHCHRRPSAFRHRAWLASLEAAYLLEVCDLPPIPSCPGICGEVRRSASTELPRLP
Ga0127431_145900	Ga0127431_1459001	F012439	FVRRPPHLPMRFHPPSSFPPPSEFYGLRAALRAWLNLATQPNSRRAPSLGFPSLIATSAAGVYHSAGIPDPAVTFRPRRFSRPRRFPPPTAFAGLFHPAATSRVCPSGVCPSPRSRTGFTRPIHALLPLDAAACDQRPRPRLQGFAPRSECGVGLDGLGLDRSAPLLGLSSSGFSPRATWERLHVPSALDLDQEEPLPADPRRLAVAWIGLPGFRLPTRSSFLA*
Ga0127431_146045	Ga0127431_1460451	F063173	VLRVWPLNSQVAFLSQFSGVVFDIAELSKGFHGPCLGLVSFPVRPLTLFRLSAFFVWPIPFFFGNARVVRPVLIHSSNRLPSGNCDSPGFETFPSYLTESGTVSNRSSSLSPFFAFTDSARTLPEELV
Ga0127431_146629	Ga0127431_1466291	F012439	ADPKVCPEHLPPPEVRASPAAAQCESPRSALPLVDLVLPGVLYADESRGHWVPRSRHGLGFSPWPSRSLFVRRPLHLSMKFHPPASSPPPAESCGLHAALRAWSNLATRPNSRRAPPMGSSPSSRRQQAASTTPQGIPTQRSKFRPRRFSRPRRFPPPPAFAGLFHPAATSRVCPSGDCPSPRSRTGFPRPYHALLPLSAAACDQRPRPRLQGLAPRCECGVGRDGLGLDRSAPLMGFSSSGCSPRTTWECFHIPSTLGLHREEPLAVGPRRLTVARVGLPGIRLPTRSSFPA*
Ga0127431_147608	Ga0127431_1476081	F020585	MINQQDQWFNQLRREESARRTLRYSLYQALEQVERLLESDMMEVPIEMQARLRQIVEAVDAQLAYRMDQSGPSALDIQDIIFEAQDRLIKQVRA*
Ga0127431_147978	Ga0127431_1479781	F027762	AVSLVSGSEPGTMIRERVVTKIIDAFGERRESGPRTKVSFADCAAD*
Ga0127431_148437	Ga0127431_1484373	F001474	MNRLAMALLAYVALAVLTWTTISDQRVRLVTIAILAMFAVKTWVRRKDL
Ga0127431_148812	Ga0127431_1488122	F035420	LPSVTGKFTFGFNVFLGQDADGNCIVNKGEIEVNGHAQKIAWHVAIHDGVDAYDGRPVHATVFSDAHPGGYCLVVGIPDDYMTARENGKGSTEPYELAQFEVCDNDRGRPQKGKPGPDAMRWRSEHHGDTHLIYLTGGNVVEHGS*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300010063: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_2_4_2 metaT (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences