Sample 3300010234

3300010234: Freshwater aquifer microbial community from Bangor, North Wales, UK, before enrichment, replicate 2

Overview

Basic Information
IMG/M Taxon OID	3300010234 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0121426 \| Gp0154198 \| Ga0136261
Sample Name	Freshwater aquifer microbial community from Bangor, North Wales, UK, before enrichment, replicate 2
Sequencing Status	Permanent Draft
Sequencing Center	Fidelity Systems Inc
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	369021372
Sequencing Scaffolds	40
Novel Protein Genes	45
Associated Families	44

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	19
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium	1
All Organisms → Viruses → Predicted Viral	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium MED-G40	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus → Methylosinus sp. C49	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities Enriched With Nitrile Substrates
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Microbial Communities Enriched With Nitrile Substrates

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → aquifer → fresh water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Bangor, North Wales, UK
Coordinates	Lat. (^o)	53.23	Long. (^o)	-4.13	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001217	Metagenome / Metatranscriptome	745	Y
F002322	Metagenome / Metatranscriptome	571	Y
F002542	Metagenome / Metatranscriptome	550	Y
F004928	Metagenome / Metatranscriptome	418	Y
F005564	Metagenome / Metatranscriptome	396	Y
F009761	Metagenome / Metatranscriptome	313	Y
F012872	Metagenome / Metatranscriptome	276	Y
F014383	Metagenome / Metatranscriptome	263	Y
F014505	Metagenome / Metatranscriptome	262	Y
F015461	Metagenome / Metatranscriptome	254	Y
F016971	Metagenome / Metatranscriptome	243	Y
F018371	Metagenome / Metatranscriptome	235	Y
F019312	Metagenome / Metatranscriptome	230	N
F021675	Metagenome / Metatranscriptome	218	Y
F023060	Metagenome / Metatranscriptome	211	N
F026568	Metagenome / Metatranscriptome	197	Y
F030933	Metagenome / Metatranscriptome	184	Y
F031469	Metagenome / Metatranscriptome	182	Y
F031874	Metagenome / Metatranscriptome	181	N
F033045	Metagenome / Metatranscriptome	178	Y
F034389	Metagenome	175	Y
F040002	Metagenome / Metatranscriptome	162	N
F041945	Metagenome / Metatranscriptome	159	Y
F045766	Metagenome	152	Y
F048633	Metagenome / Metatranscriptome	148	N
F049237	Metagenome / Metatranscriptome	147	N
F052592	Metagenome / Metatranscriptome	142	Y
F055778	Metagenome / Metatranscriptome	138	Y
F058909	Metagenome / Metatranscriptome	134	Y
F059027	Metagenome / Metatranscriptome	134	N
F060822	Metagenome / Metatranscriptome	132	N
F063588	Metagenome / Metatranscriptome	129	N
F065837	Metagenome / Metatranscriptome	127	Y
F067757	Metagenome / Metatranscriptome	125	N
F068865	Metagenome / Metatranscriptome	124	N
F069991	Metagenome	123	Y
F070135	Metagenome	123	Y
F079362	Metagenome / Metatranscriptome	116	Y
F082775	Metagenome / Metatranscriptome	113	Y
F083262	Metagenome / Metatranscriptome	113	N
F085360	Metagenome	111	N
F099818	Metagenome / Metatranscriptome	103	Y
F099890	Metagenome / Metatranscriptome	103	N
F103269	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0136261_1000555	Not Available	26512	Open in IMG/M
Ga0136261_1000717	Not Available	21123	Open in IMG/M
Ga0136261_1001234	Not Available	13144	Open in IMG/M
Ga0136261_1001767	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	9911	Open in IMG/M
Ga0136261_1001931	Not Available	9235	Open in IMG/M
Ga0136261_1002197	Not Available	8367	Open in IMG/M
Ga0136261_1002241	Not Available	8214	Open in IMG/M
Ga0136261_1003000	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium	6632	Open in IMG/M
Ga0136261_1005307	All Organisms → Viruses → Predicted Viral	4331	Open in IMG/M
Ga0136261_1006810	All Organisms → Viruses → Predicted Viral	3628	Open in IMG/M
Ga0136261_1007305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium MED-G40	3455	Open in IMG/M
Ga0136261_1010344	Not Available	2709	Open in IMG/M
Ga0136261_1010526	All Organisms → Viruses → Predicted Viral	2677	Open in IMG/M
Ga0136261_1012690	Not Available	2355	Open in IMG/M
Ga0136261_1014647	All Organisms → Viruses → Predicted Viral	2125	Open in IMG/M
Ga0136261_1018535	Not Available	1810	Open in IMG/M
Ga0136261_1020122	Not Available	1714	Open in IMG/M
Ga0136261_1022992	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1565	Open in IMG/M
Ga0136261_1025773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	1450	Open in IMG/M
Ga0136261_1026655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1417	Open in IMG/M
Ga0136261_1027614	All Organisms → cellular organisms → Bacteria → Proteobacteria	1381	Open in IMG/M
Ga0136261_1035838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1145	Open in IMG/M
Ga0136261_1036662	All Organisms → Viruses → Predicted Viral	1125	Open in IMG/M
Ga0136261_1045508	Not Available	963	Open in IMG/M
Ga0136261_1046528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	949	Open in IMG/M
Ga0136261_1048364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	925	Open in IMG/M
Ga0136261_1051887	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	886	Open in IMG/M
Ga0136261_1052497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	879	Open in IMG/M
Ga0136261_1054125	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	864	Open in IMG/M
Ga0136261_1056244	Not Available	845	Open in IMG/M
Ga0136261_1060327	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	814	Open in IMG/M
Ga0136261_1069724	Not Available	754	Open in IMG/M
Ga0136261_1086333	Not Available	675	Open in IMG/M
Ga0136261_1086631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus → Methylosinus sp. C49	674	Open in IMG/M
Ga0136261_1089532	Not Available	662	Open in IMG/M
Ga0136261_1108810	Not Available	594	Open in IMG/M
Ga0136261_1113449	Not Available	579	Open in IMG/M
Ga0136261_1116027	Not Available	570	Open in IMG/M
Ga0136261_1118273	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
Ga0136261_1128419	Not Available	528	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136261_1000555	Ga0136261_100055533	F049237	MNNTTATAIGYVGAIIMAFFSFTMLPALAILGLVLLTVQMVYSRIWNLVILNLISIGGFSAQFIGA*
Ga0136261_1000717	Ga0136261_100071710	F052592	MHQLNIVSRIIECEENGWHDLLSKVDGITQSLIDNPSATQPVITALRFWCDAVDCRVNGLPPDEQDVMLHNPIMNIRAAFGTEV*
Ga0136261_1001234	Ga0136261_10012341	F002322	MADKLPYCKHVEKHILTCIQGGVAIRQMLASMQHLTNAPKSLSTMYKTYGSFIEQERSKINGAVGKKVIDQALEGDFKSQELFLRSKGGWSPTQTNIEVEQETDPDLDESAADTLLTLLGIDNDPTPEEDNG*
Ga0136261_1001234	Ga0136261_100123410	F002542	MHPTYLGWQVDWPVFIKMPVSANGKNWKRGEHFNWLEQSIDQDKVAILYATGYLYHNKELEVQSKVGDRLSEFSGKQLETLVNLLNAVVKDRTSSTNEYNIKKCKKSKIDDKQRGLIRRFLNNSAWVTEDFYVIRDKILND*
Ga0136261_1001234	Ga0136261_100123412	F079362	MSFRSFDLLNLVRDFGEDLTLRKVTTSGAYNPATGEIDGSGTTDYTVTGYFYNYETLNVDQIRKGTRKCVISALDGHAPDEDDQLVGNGDTVAITAVTTIFSSGSAVCYICHVEE*
Ga0136261_1001767	Ga0136261_100176710	F048633	MPMKKAMPGGKITNKGKYKAGGKVQRNKKGHGGMMTIIIKKNKKK*
Ga0136261_1001931	Ga0136261_10019311	F015461	MGEHLMENVTKELEAIMYDVIEVAARTGEYKMDIDRGINTNHHREIENVPKAKTIENLMYYLIEAKQDMDRVQDSLKEIKEKLDDLLDVVEYEAIAKEIR*
Ga0136261_1002197	Ga0136261_10021977	F031469	MFKKIKRKLCELMCKVFGITQCLCNHECSCKKEAKK*
Ga0136261_1002241	Ga0136261_100224112	F014505	MGRIETFYRKNFKRLTGFIKEYTDGSYEVASDIVQMVFLRLLELEGEGRTNFYEEDSLNFFYVYRSCINTALKYQRAKKKINKVSLEDFDVEDYQPYPEEKAALEKLITIMEDEMKELHWYDEKMIKIHMEGTSMNQIHRDTDIGLTSIKNTIKNGKARIHDRLREDWTDYSNGDFDKI*
Ga0136261_1002241	Ga0136261_100224116	F012872	MDLHFEGNRLYYMEKESELYRALDHLSKELSDQKTMTKEDMWEVFQILADSAAVYRHITDYFTTLDKLILDARIKNGKLKQEIYDLKKENHRLNEMLNREMDGF*
Ga0136261_1003000	Ga0136261_10030004	F103269	MEKVADIKVFNDTFVEMLKQGQEKEAAVSTQKFTRNKLRETSFAEKVITPIDIANDELDKAEDPELLVKWNDREPDQAPAVTVPLGVVPDGFQFKGTRYPSYFSRIVSPLFSKDIDKLRTYDYDIRQILLENSTKDIATEIDTKFMDKINSVVGTINTANPLNGLGLPQYVSVAGGITRQNVADSFKVIQRLRVPFGPTQPDGGETKGVMLMSNITAQEFVKFERSEIGGDAAQETWVSGLPTKTLLGVRPIYTIKTDLVPENTVYYFSSEEFFGKYYRLQPLTVFMETKAFFLSFFQYLNISISIGNVKGVCRIDFV*
Ga0136261_1005307	Ga0136261_10053071	F060822	MKTKKEKDKTDIECEHIDTDNNNSVYMFHNIKNNIHLFINASNLEDAMVQFDLCNFSFRYEWKIFLETGQQPT*
Ga0136261_1006810	Ga0136261_10068105	F021675	LDINMPLYTFINKNTNEEYDEVMSYEDLLEYVKRDDVEQVFKIKITRYSDAGGMKDQFTDWCKDSAVKGKGDFKPYGKATKGFKEGKNG*
Ga0136261_1007305	Ga0136261_10073055	F040002	MNFKQTVIFAFIVTIIGFGFKDFCPNYKDINRFKNLLNQTSDGKVYEWATTKKCELSIVSIDGVSLDKYMKENFSKIKDDEEIKQLEKMFK*
Ga0136261_1010344	Ga0136261_10103442	F031874	MVKRCLNNLKEIFLYADSQPTEIMLGMLNFILLLPATMIELGWIPIYQISGILAGGYQLFAVARQDISMRRNASFLSFVVFTMTIVLYGSCGYFWRSASHWGWVVLWLSSLSSVKRVTTEYYHRKWNNKA*
Ga0136261_1010344	Ga0136261_10103449	F083262	MRDPNIDRYLHKMAMLFQNLGLDSTPEERLYAKEEEFRYLGRIAEIDWEYAQRLGYD*
Ga0136261_1010526	Ga0136261_10105264	F099890	MNLYEKLSPEALKVLDQEMIKFPYSTKALITGLKENRYCLDLTLNQCHRVAAVFGFECTLTNIINFFES*
Ga0136261_1012690	Ga0136261_10126903	F014383	MANEIYNSTWFGNTIETASSIGTSTEMIQGQINMNDRQEVEAVKCLADSIHTIAIQDIQN
Ga0136261_1014647	Ga0136261_10146478	F001217	MSKTKFNGFEKYFIQTALRSAIEEAEVDVLAAESNGKNSIYAPGYFTMVGNEIIDKVNSMTLKKFQD*
Ga0136261_1018535	Ga0136261_10185351	F082775	MNEPDILYPAIFVFSMLLIGLVLTIWEFSRLQKRKQQMQEKGGHVANREFH
Ga0136261_1020122	Ga0136261_10201221	F026568	MHKQTTYKEMYDPLFHYTRGILRFDKDKFTFVAYRMPYLDLDRKSWKTEREFDADYRRMVNRKYSSF*
Ga0136261_1022992	Ga0136261_10229924	F069991	MKDIFVVTMHRNSLSQHSYVVGLYEDFQDAKKAANIEEQSRGGKYDWIISSYTLNELPEQL*
Ga0136261_1025773	Ga0136261_10257733	F004928	MGQVIQSIMAEPENTVEIVVHISETLGEQRRGDLVAGLEDNGGITTAEFCPLRYHLMLVRYDRDIYSSQDVLDRVK
Ga0136261_1026655	Ga0136261_10266551	F009761	NILKDPASIGGRDVFKASLFTGYELPKINIMNKTKR*
Ga0136261_1027614	Ga0136261_10276142	F018371	MAISNVIQPNRLTNMQDMETHVTGPDGANRLLTYSGMAEVELCGGLPHPRWSLEVVCFDIGRVYDTANGEDVINIVATAALAGTRTDGVASFAGWQIFGAAGELDVDSNRVRMNIAAGARDTQAFLEQISFHINVLAKVNE*
Ga0136261_1035838	Ga0136261_10358383	F004928	MAQALHSIDIQPDPTVEIVVHITETLGEQRREDLVTALEDNGGITTAEFCPLRYHLMLVRYDRDMYSSQDVLEYVKAQNVNAKLIGPV*
Ga0136261_1036662	Ga0136261_10366622	F019312	MMTHSKAILQAQIIFEEALSDKECIDKLLHIDAQMYANTGEDTSKAEMDSIKRASAFIYRLIKGIDYLFYRYLYE*
Ga0136261_1042988	Ga0136261_10429881	F067757	MRKLSFVVVFLFVQLNVFAQSAELEVGYDLAQEMLQWEEMNPRRKAESDRYLKSMNYAFGFNGPDVEEV
Ga0136261_1045508	Ga0136261_10455083	F034389	MNIYTEAQEIAREALAECEGDYDVARDMIHQMCDGHEVAIYYGKAIQFCAEQNTNEGEAWLEDCGGIVQDGDTFGTIACRIAFATLLCASEQALSELETEAA*
Ga0136261_1046528	Ga0136261_10465282	F045766	MTDNQERLEQVIGRMQTIQRAIRASGQPASMFELQELKDLGVEYARLVEALSRSADDSIQKQ*
Ga0136261_1048364	Ga0136261_10483643	F030933	MEISMNDDTQSRELQERRAKAVKTALVLGFVALAIFVTFIGSAIFGR*
Ga0136261_1051887	Ga0136261_10518873	F055778	MFSNVDLPEPELPTIKTNSPSLIENDALSRALTWLSPWP*
Ga0136261_1052497	Ga0136261_10524971	F016971	MENAVQQMPIDAKNAVEVVVYVKADLGEDQRNLVISALEKTDGIIGAEFCTLRNHLMLTKYNKDIFSSQDVLKSFDSLKLEAKLIGPI*
Ga0136261_1054125	Ga0136261_10541252	F059027	LKQQFESPAYDGVSRAETGNARLLHVNEVISWIRDVAVSSSYLDNAAAIAAGLKTGDIYHTAGLLKVVIPVVEEV*
Ga0136261_1056244	Ga0136261_10562441	F041945	LLPEIKRLKKENEYLRRQREILKKAASIISENPELGMR*
Ga0136261_1060327	Ga0136261_10603271	F023060	EAKPYTGKAFSAIALSKIPYENLYYRNGTKFIEITWRNGRRSFPYPLSKAKALELFIEHDDPEQPYLLVGKASLVPNTQKMLYFVGLNGSKQEGQLPLKLYGIDDSETIFPDSSYRFINFVKVPLVVDFDKKKRFLIKPGKPIVHKLNLSKGGEFTPFVLRDTKGKVLGGTRLFSHANNREMVLIFPPKKGSKRMDIRFFSD*
Ga0136261_1069724	Ga0136261_10697243	F063588	MRAGVYKMQFNIAGMFLNVEPRFGIGLDIESVESRPVWTVKDGELSTMAFDGLVLLVPFFIVTLGNVWT
Ga0136261_1086333	Ga0136261_10863331	F068865	MLLGVLIWLQAQFAGAHSTITLERHTEVVDKIEGQLADAMTEKDRIHLQGPSDLVSEVLARTNAIALAGCAVSVLGLLLLIAEVTRKKGSKTLE
Ga0136261_1086631	Ga0136261_10866312	F099818	MELERRGRVIAVGLGPTGYAGRSPLVQRKAVAFVRWHEPDDARA
Ga0136261_1089532	Ga0136261_10895322	F070135	XYALNIPLDTNGQFKLQVYADGFAPITQKFDEFSAINDVRMARSVECQ*
Ga0136261_1108810	Ga0136261_11088101	F033045	MNISELELPPDLYAEETEPGGDADKLIAPEKLVSWADQGRGDAIFRLCHTVHERELANINAWERERIRQLEDELMAVGNDEDMSARNYANVRHYHTTLEDVAREAELKRARVKERMIKHQATLEDLVKEAREFI
Ga0136261_1113449	Ga0136261_11134491	F065837	MALDVSALTAFNNEIAGELLPKIVYGGSTMEYVTVKEGVKHQEPINLMEVDLQVQYGTCVSTPSGSLTYSQRNITVCPRTSFDGICLKDMDKYYLGIADLEPGSYNTTFKTAQVYSDLLVNQFQKSNDTFLWNGDAGCTDGGTGLISIISGSTAGVVVPAGSGSQAITAATALDVMDDML
Ga0136261_1116027	Ga0136261_11160272	F085360	XXXDNKAQSYCFNKGFVITLEPSGANYKVKYQRGHKAQYYMQGKEFDLQEAYQSIWDLYTKIYNYDKQKENESKTN
Ga0136261_1118273	Ga0136261_11182732	F058909	MKLSNTETNVLLVALDHMEEHLLDLMSERTLQLVAQWKERLDACKTIRTKINQL*
Ga0136261_1128419	Ga0136261_11284191	F005564	EIDMHKVFIGLMVIFFLGDPSLQTLAWLGEMKLYIVAAAVAMVSIPFVISQLDG*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300010234: Freshwater aquifer microbial community from Bangor, North Wales, UK, before enrichment, replicate 2

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences