Sample 3300010252

Basic Information
IMG/M Taxon OID	3300010252 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046783 \| Gp0111642 \| Ga0124948
Sample Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_2100 MetaT (Metagenome Metatranscriptome) (version 2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_2100 MetaT (Metagenome Metatranscriptome) (version 2)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	106491887
Sequencing Scaffolds	29
Novel Protein Genes	29
Associated Families	26

Dataset Contents

Total Genome Size

106491887

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	20
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon geysericola	1
All Organisms → cellular organisms → Bacteria	4
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-006	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon geysericola

All Organisms → cellular organisms → Bacteria

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-006

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium

Ecosystem Assignment (GOLD)
Name	Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Ecosystem Assignment (GOLD)

Name

Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → hot spring → microbial mat material

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Wyoming: Yellowstone National Park

Coordinates

Lat. (^o)

44.963

Long. (^o)

-110.715

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002372	Metagenome / Metatranscriptome	566	Y
F002970	Metagenome / Metatranscriptome	517	N
F004307	Metagenome / Metatranscriptome	444	Y
F004791	Metagenome / Metatranscriptome	423	Y
F005302	Metagenome / Metatranscriptome	405	Y
F005631	Metagenome / Metatranscriptome	394	N
F007404	Metagenome / Metatranscriptome	351	Y
F008499	Metagenome / Metatranscriptome	332	Y
F021779	Metagenome / Metatranscriptome	217	N
F030445	Metagenome / Metatranscriptome	185	N
F031513	Metagenome / Metatranscriptome	182	N
F033261	Metagenome / Metatranscriptome	178	Y
F039435	Metagenome / Metatranscriptome	163	N
F057401	Metagenome / Metatranscriptome	136	Y
F065815	Metagenome / Metatranscriptome	127	N
F069556	Metagenome / Metatranscriptome	123	Y
F069792	Metagenome / Metatranscriptome	123	N
F073601	Metagenome / Metatranscriptome	120	Y
F075533	Metagenome / Metatranscriptome	118	Y
F075804	Metagenome / Metatranscriptome	118	N
F081941	Metagenome / Metatranscriptome	114	N
F090444	Metagenome / Metatranscriptome	108	N
F093913	Metagenome / Metatranscriptome	106	Y
F093914	Metagenome / Metatranscriptome	106	Y
F097413	Metagenome / Metatranscriptome	104	N
F101227	Metagenome / Metatranscriptome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0124948_1009224	Not Available	534	Open in IMG/M
Ga0124948_1009712	Not Available	875	Open in IMG/M
Ga0124948_1015747	Not Available	691	Open in IMG/M
Ga0124948_1017654	Not Available	2334	Open in IMG/M
Ga0124948_1017742	Not Available	555	Open in IMG/M
Ga0124948_1030426	Not Available	745	Open in IMG/M
Ga0124948_1034490	Not Available	1441	Open in IMG/M
Ga0124948_1045952	Not Available	576	Open in IMG/M
Ga0124948_1055266	Not Available	1125	Open in IMG/M
Ga0124948_1058639	Not Available	524	Open in IMG/M
Ga0124948_1064933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon geysericola	626	Open in IMG/M
Ga0124948_1067988	Not Available	1388	Open in IMG/M
Ga0124948_1068786	Not Available	718	Open in IMG/M
Ga0124948_1072102	All Organisms → cellular organisms → Bacteria	1131	Open in IMG/M
Ga0124948_1076415	Not Available	1051	Open in IMG/M
Ga0124948_1079552	All Organisms → Viruses → Predicted Viral	1062	Open in IMG/M
Ga0124948_1094528	Not Available	906	Open in IMG/M
Ga0124948_1096539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	674	Open in IMG/M
Ga0124948_1097016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Roseilinea → unclassified Candidatus Roseilinea → Candidatus Roseilinea sp. NK_OTU-006	531	Open in IMG/M
Ga0124948_1106929	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium	2247	Open in IMG/M
Ga0124948_1112307	Not Available	789	Open in IMG/M
Ga0124948_1117317	Not Available	954	Open in IMG/M
Ga0124948_1117904	All Organisms → cellular organisms → Bacteria	1576	Open in IMG/M
Ga0124948_1125575	Not Available	512	Open in IMG/M
Ga0124948_1126215	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
Ga0124948_1127824	Not Available	604	Open in IMG/M
Ga0124948_1150744	Not Available	1695	Open in IMG/M
Ga0124948_1152579	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
Ga0124948_1162196	Not Available	615	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0124948_1009224	Ga0124948_10092241	F005302	NGTIWTAVSDATVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPVEVTLTFLYNETTNSASNAIYDHFESPTPMLAVRWSPTGVKPNARAYATSNDGTTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGAAPVDLSG*
Ga0124948_1009712	Ga0124948_10097122	F008499	VGTKKSRSEPRWKRKEREVIKFLQAAFGRVSDPTLARLLTRTGRVGHLTRFGFDGIVGNEPGFIVEVKARKGMLAKQTIEALLQTVDRAAQFGRIPLLAVVLGDDVPARTASGAKVDREWVLIPLRELKRLVGKEAAYE*
Ga0124948_1015747	Ga0124948_10157471	F031513	GWRALSATYGDSGIVADGVTYPASLPVVRVGRDLVWIARCDSAALVEHQALERARESAALASLWRGGGQWLDFLRVAGVVLPAVFAYFTWAQVGALQALVAQILALVGEGR*
Ga0124948_1017654	Ga0124948_10176541	F065815	MQPETNNPNPQANQPTKSTEETSVTDAKKNNTSTPEVEQQSKSGFYQDLNSVLLVTILSLLIYTVVGSGLSWIVSWGLAQANLYPWVFNQSPILLWAIFGLVSMLIIGVTMVQVESLVETRILPKLQKFSQPTLLLVNFLVLMGLILGMYWLVSNFVNYLNITFWLK*
Ga0124948_1017742	Ga0124948_10177421	F033261	LHDPQAQTPAERWPVVLLTADRQIDARALLNEYGDHWGQEFGHRIGKHDLDLDIVPPGYVLKTRRDEQGELQREVEYDQTAFFLSAWLRCLVFNLMSRFAEALGGRYTRMWAGTLLRKFIRRPATLYLVDKELHVVFDPFPGQDELRPLLDRLNAQRTALPWLNNLVVHAENPT*
Ga0124948_1030426	Ga0124948_10304261	F007404	MELIDIFQILAAGHQHLTLVDYLYNALAGAIGALTAYLADNEGEVFLPRYDREYHSVELGALGRVLTGAGAGVIVGYSGFVPFAAGIIAPAILPFALDK
Ga0124948_1034490	Ga0124948_10344902	F075533	VSVGGLAQMRIRTKKAFTITTYDLLFLAYLYDQPERYFRIRAYENIRVTSIAYTNLAVGVLIAPITAVPQPDAYTFTLGTFTLQPAPGTVIETNCYGWIVGVLAPGNETTAGATSVTFHVTVNNTGAYSGHAIDEGLLTSALTGRGGCCDIKLPTGTNVSIAKPDANLREIVEQSTDEYAQVRYRRKRFIRDRTLPTIDFRADSPLVWRFPETTRVVDISKAPNRVFGQYRGYWTDHLTATTTILPLESRRQSLAWRVASVGEYGSKAIAEARRDEAAAAFDRQIAPITIELDNARYELMTREGITVPNWAADVSDYAIVSGYFRNAKITSRTISRERTTYTVSFNPDDFVNALR*
Ga0124948_1045952	Ga0124948_10459521	F004791	MPEPATIYDVDAVRVDRSVLTIREAASLLNRELTAPVIARLVRKAIGDQADRFPIRALKSVYERVLPQIFEPDAAIRTRVEGLVPNVATITLGEYHQFLDASERGIAFPEAAQTLLTKAFGDGILEEPYAAAALLLKKIFDAVGDEGKE*
Ga0124948_1055266	Ga0124948_10552661	F081941	VVILALYIIFNILLFGILKIESTNYIISQFFSSLEILGILSLSLFIISGFHFILIQLSNLPYSDYKLEITTAIFFVLDFLLVIPTAFTATQFELSPSLKLLLDTICMMTGSIYLVLAAGVFYMDLEGNKILAKRYTRWSVLVFLFFFFIIAMETVRRSMELNILLTFTGINLLLILVIMFADLKNLLNPYPNYQGKTNSIEIISFLLLSATILIGKTLHLVLMLNIFG*
Ga0124948_1058639	Ga0124948_10586391	F004307	HNSGRERPALNGAYIGRFLGVSERERPTFETRNDPQPEYEQVFVFEFEVEDHELDAPVRVSKWVRKPARLSHPGKGGKVTNLYKVLSALYGVPQMTDEQLANAEDFVQNVAVGREYQLTLETKPSGWIEIVHIAPTRRLRQRKEATIDEVPF*
Ga0124948_1064933	Ga0124948_10649332	F005631	VGRQRIRAVGAAFGWCETMKLNVAVDIDNALRKLLPQTARIEAALDAGAAAAHSVMQIYPPPPAGSRYRRTGNLRQKLRIEKLSRTSRIVENTASYARYVYGMPQARVHRGRWASVVDAAEAARTEAEKVLRGR*
Ga0124948_1067988	Ga0124948_10679881	F069556	PHYHALIYVSPGLPWLTPVAVALAERWSEIAGAEWRADVRQVARDGIVAVARYLTTDGVAGASYEVASPASKIPAGRSYAQLLYDYARYRSSADAALLYEYAAALHGAHHLTVSPRLRRLYDFVDPAAGWSEIADEDVLALLNSDEWRSIVDAGEDRNLLDDLARLC*
Ga0124948_1068786	Ga0124948_10687861	F057401	ALVKPGETTVRYDHGYDGSVLRFAQASVAAGLAEVWNLAPSLKAFAELLPGYSVARGWVVEGPAGYGVLGPEYDYPETLVVDIGGNLQVRALVKPGETTVRYDHGYDGSVLRFAQASVAAGLVVGAEGYKAAPRYWARVARLLIIAEKPSDLEAEGIRDALRAMVGEEPAALEEFDGYFELTGPGILAGPEVFQPTAP*
Ga0124948_1072102	Ga0124948_10721021	F075804	SLVVGLFFVKMLKHISSSLSRSKKYRLWQEAYWLVLLNQALKTFTEQHLQLKNPEIRAFVRLQGQVLHVKIAAKEPTVLAALKIAQKALLDFLHQNLLQKAQLVTQLKISFLVK*
Ga0124948_1076415	Ga0124948_10764152	F093914	VGGSSDYATITIGKREPVEITLTFLYSEATGAAATAIYDQFESATPRLGVRWSPTGLVASARAYATSNDGNATGLGVITGVTLSALDPSEAEPYVAMVTVRTPTLRQYAIAATNPTNLA*
Ga0124948_1079552	Ga0124948_10795522	F030445	MLVAITRPHQHFPVPLTAADYEFTTSDDGDERGRVTLPPALARSGVMTQIGDELVVYCTQLSRTIWRGQIERIEETTDGSITWHALGFGALQRDARISVVQNMSDMSRWRPVGSGFIPL
Ga0124948_1094528	Ga0124948_10945282	F039435	MLIAITKPHQQFPIPLTSAEYELTTSEDGDERGRITLPPALARSGVMTQIGDELIVYCTQLSKTIWRGQIERIEEAQD
Ga0124948_1096539	Ga0124948_10965392	F073601	QAKATCLVMALPSKRREGQRMFWVLHFAWCCAIKIMACGSIIRPLPVEKRALAGMGVLLQQE*
Ga0124948_1097016	Ga0124948_10970161	F021779	GINLSDAKTEIFLPIAWRINAQSTCGFWRYTGLIVQNAGASNANVTVRAYNNAGALINTWNDPNPLGPFTPRGYNTRFNAGSGYGTDSAVIAALGANFDGTLRLTSTQPLVAVAESWQNCNSGSSPMTDSNITELN*
Ga0124948_1106929	Ga0124948_11069292	F101227	VSAYYVAILFTTVLFQLDGLRWLVISIQQWLISGLQSVTTLPITATIYWIVLFLVTAIITSLFKFFIIDPLELHANDDQTRDWWVWLFALLVFGLFIYTLNLNFNQSMPLELPKFLVKIFQGSRNTPGAEINSLAESNFYSIFPWLWQVGPVIFMYYYASQEKGKKASSS*
Ga0124948_1112307	Ga0124948_11123072	F081941	LFIISGFHFILIQLSNLPYSDYKLEITTAIFFVLNFLLSIPTGFTATQFELSPSLKLLLDTIYMMTGSIYLVLAAGVFYMDLEVNKILAKRYTRWSVIVFSIFFYLISLETERYSMELNILLTFTGINSLLILVIMFADLKSLLNPYPNYQGKTNSIEIISFLLLSATILIGKTLHLVFVSSIFG*
Ga0124948_1117317	Ga0124948_11173171	F090444	SNSIESTSLNGIKSTSLNSIKSTIEPVRGNENNDFIAAFEGIMNKFPGNKHTVFLISDGAFNDPDNTRDRSLEVHPWLEEHHQFLENLYMLLWNCPPNNYSGYQSDKDMWARYLIDHRMMQKGRLLEIEPDDVRGLGKFLQNMIESTNLGNALPKGKYNGWLQGDINIPDIPGYTSTITLSVWVLPTSTAEDVQASLHIGSEQYELTLSNSTLLGRKYDVPPPYPNSCISSLRLSFDSEIYSGYYVLEPHFIHEDLKLQQVIINTGDNLDYADIYANTGVYTIWNSPKVLMELKGLYDTYGGGNVSILKSYRDCYSF
Ga0124948_1117904	Ga0124948_11179043	F005631	NNALRKLLPRTAQIEAALDAGAAAAHSVMQVYPSPPAGSRYRTGNLRQKLRLRKLSRTSRVVENTASYARYVYGMPQARVHRGRWASAVDAAEAARKEAVAVLQGR*
Ga0124948_1125575	Ga0124948_11255751	F073601	MLQAKATCLVMVLPSKRREGQQMFWRLHFAWRCAIKIMACGSIIHTLPVEKKAFVGMGVLLQQE*
Ga0124948_1126215	Ga0124948_11262151	F093913	MRFYVKSVGTNITLVDIDTGDKFSVPASALQKLFGVTPQQDEVWEYRANRLDDIAETFRKWQVVQQALQEQQGVQQQ*
Ga0124948_1127824	Ga0124948_11278241	F002372	MPTRREDRLWATVHQRAMHLRALLDGLDMVDVDVRYELDYYPCAIVVLLLLRVDSPPLVIRYTYVHANRQWEYHSEWALRIIDAALLLVKEYRADPSAAGAIGV*
Ga0124948_1150744	Ga0124948_11507441	F097413	MIACAKSIVNILLVLGIIFLGVSMGYLAAQSLLSGQGSFWEIIKERTRDLIVGILLIGTPVAILSLIDPRSQFLDFSNFVELSLGKNLRDPTGKADTSCEGDPGSTEVVYRYTIEDDKFCDGPWGTPCDYDVKFPTLAFYNCKIFFGASRHGSHLTGYFPIFDVENIKIEFGEIPRGRNRIDYAGPRVAAGENGVGIISVDSFTRNEWSIHTRFWDGESETYKDREYQIFTDDYFLSVARVAYYKGNWIAIAPIEREYKVANLGPDLKKRGNINQIEWKTFESDEVTYAGHAELITNRDFTELYAIFGARGDNSQIITIMKYKEDTNNEATGTFEKIAEINTSDTNGGVCYRPSGALDSQGNLHFTCDDTGGSLYYYTNAEGSWKKQLLTNNGLNGVLRIDEKDGIHVGFITFRPRSPAYMYSSDGNTWTRPIVANEIVNPKYGFTANMVGGVAIHGQNPYLLVAFEDWTNGGPRVGLIMFGAET*
Ga0124948_1152579	Ga0124948_11525792	F002970	MSYSAVTDIIEMLAGLTAQYNSVVVPVRRLTSQPNWSDAAQLPVRIIPALGGLRLIEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTASALVNYIEDYVARLRSAWLARGDVQLLNVSGIVDVVKYGERAYEGATVTTRFAHLVRAPSA*
Ga0124948_1162196	Ga0124948_11621961	F069792	GSGRYGFFGRQTLAFLILFLLVFSLPSSNFRKSEVLVDPKTVINSNFFLKQVKPETLKNSLPSLQETKISLIFNRQDKRFLFDVSGNPVFNKTIVQAYSKSFIYETPNLDLNLETFRKAQTTKGQKMRQLPLDDLIPRPKNPDPAKTNLLLYPKYNIRAPIIYTTAADFYHTNPDGSIDFNRPIYRPDMSPYEKTQIPIQIKLR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300010252: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_2100 MetaT (Metagenome Metatranscriptome) (version 2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences