NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300010265

3300010265: Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 9_31_10_142_A3 metaG



Overview

Basic Information
IMG/M Taxon OID3300010265 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121361 | Gp0153732 | Ga0134098
Sample NameSwitchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 9_31_10_142_A3 metaG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size225419778
Sequencing Scaffolds24
Novel Protein Genes28
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium ADurb.Bin1792
Not Available7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus → unclassified Butyricicoccus → Butyricicoccus sp. AM05-11
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSwitchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa
TypeEngineered
TaxonomyEngineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading → Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)na → na → na

Location Information
LocationUSA: Dartmouth College, New Hampshire
CoordinatesLat. (o)43.726Long. (o)-72.1429Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000698Metagenome / Metatranscriptome930Y
F001564Metagenome / Metatranscriptome670Y
F001938Metagenome / Metatranscriptome614Y
F007513Metagenome / Metatranscriptome349Y
F010244Metagenome / Metatranscriptome306Y
F020859Metagenome / Metatranscriptome221Y
F021959Metagenome / Metatranscriptome216Y
F053364Metagenome / Metatranscriptome141Y
F054066Metagenome / Metatranscriptome140N
F059695Metagenome / Metatranscriptome133N
F059780Metagenome133Y
F064345Metagenome / Metatranscriptome128Y
F070666Metagenome / Metatranscriptome123Y
F075996Metagenome / Metatranscriptome118N
F079824Metagenome / Metatranscriptome115N
F085349Metagenome / Metatranscriptome111Y
F088753Metagenome / Metatranscriptome109N
F101228Metagenome / Metatranscriptome102Y
F103108Metagenome / Metatranscriptome101N
F105007Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134098_1003850All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium8183Open in IMG/M
Ga0134098_1004454All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes7040Open in IMG/M
Ga0134098_1005128All Organisms → cellular organisms → Bacteria6099Open in IMG/M
Ga0134098_1007012All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes4403Open in IMG/M
Ga0134098_1008540All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium ADurb.Bin1793538Open in IMG/M
Ga0134098_1010917All Organisms → cellular organisms → Bacteria2738Open in IMG/M
Ga0134098_1013856Not Available2118Open in IMG/M
Ga0134098_1014179All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus → unclassified Butyricicoccus → Butyricicoccus sp. AM05-12068Open in IMG/M
Ga0134098_1015298All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium ADurb.Bin1791917Open in IMG/M
Ga0134098_1015418All Organisms → cellular organisms → Bacteria1902Open in IMG/M
Ga0134098_1015802All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae1858Open in IMG/M
Ga0134098_1017347All Organisms → cellular organisms → Bacteria1696Open in IMG/M
Ga0134098_1018365All Organisms → cellular organisms → Bacteria1606Open in IMG/M
Ga0134098_1023627All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1270Open in IMG/M
Ga0134098_1027460Not Available1109Open in IMG/M
Ga0134098_1030628Not Available1012Open in IMG/M
Ga0134098_1031773All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium981Open in IMG/M
Ga0134098_1046606All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium729Open in IMG/M
Ga0134098_1050479All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium685Open in IMG/M
Ga0134098_1063226Not Available580Open in IMG/M
Ga0134098_1067188Not Available555Open in IMG/M
Ga0134098_1072012Not Available529Open in IMG/M
Ga0134098_1072147Not Available528Open in IMG/M
Ga0134098_1076985All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum505Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134098_1003850Ga0134098_10038501F075996MLNSATGQAVGILLPFWSYIPTDRISPKGLLYPVSQVMKEGRLFRFVMLVGEPEEEVPLAGKDFFWQDTDRMYRPKYCAIDITADFKGRICTFTGLYARRDGLYVNGKRAGSFEDMRDIFVHYGLGEVWNLITGDIRPSCCVYKYGRLFVPETEVCLGLLSEKAQFPKGYDMKDLGRVERLLEDAGVFKIPEEISLAEVEEKLSKFSDLEK
Ga0134098_1004454Ga0134098_10044547F085349MFKFLDIREQLREERRKNEELRALCKDLEDAAIELAEIVAANEKAIREVQDDG*
Ga0134098_1005128Ga0134098_10051285F103108MEKTELIIPFTKKLAEAAGLAKETEKGEKFFRCLRMPGYFPPKGDIESFAERLCKLLLEKHEEALLYTENGLRRVLEDFPAAEEILEKLSSSWEEDAPDAYAVVSRSDDEWAVLFGYEDGVEAVLCKKGRTVRVGADEPER*
Ga0134098_1007012Ga0134098_10070125F020859MKKIIAKEVHPSNVDFRHYFDDDGLKSVGGENCAVYIIPADRGRYSGFNLEEYEEIEEMADSLIETFEEVSPKNEYYPTYKEAMLSHNIDYTSRRCHLLKEWAEHANPYDTRDIAAFLTITTGEEWNVRAFRGYSQGDYCEVVYCKAHYSEEHITEIGKFWLGCGTEFYIDGCRGYYVPDTIRWQEGETLRKYLADCYGCKPDELEIYLYDGEHIVADYRLMD*
Ga0134098_1008540Ga0134098_10085404F053364MHRTLHEFNWFCSCVIWGADPLIDIEIIKAEADGDEVRVRALKDRCNEENWIHYRFGEWYSHGSDELIRLAIAFLLYCREQYGEEVGA*
Ga0134098_1010917Ga0134098_10109175F059780MYYLIGIKKGVHPCGNDGTLITRYKSEYKRRETAQRFAAKYALDEVYGLQVYSQKLCEMEPAEFIDYIRRNCKRII*
Ga0134098_1013856Ga0134098_10138565F103108MEKTELLIPFTKKLAEAAGLAKETKKGERFFRCLRVPGYFPPKGDLESFAERLCKLLLEKHEEALLYTEGGLRRILEDFPAAEEILEKLSSSWEEDAPDAYAVVSRSDGEWAVLFGYEDSVEAVLCKKGRTIRIGADEPER*
Ga0134098_1014179Ga0134098_10141794F001938MIEKIYKNKYMVVCDNCGTGQECDSWADVMDFMNEEGWKKKLLYGEWKHYCPECQEGLKC
Ga0134098_1015298Ga0134098_10152984F053364MSDLLNDILVECCKLRGCYPLMHRTLHEFNWFCSCVIWGADPLIDIEIIKAEADGDEVRVRALKDRRNEENSIQNRFGEYYSHGSDELIRIAIAFLLYCREQYGEEVGA*
Ga0134098_1015418Ga0134098_10154182F001564ERPSVRFLIHWALRREELCDPRLCPDAPEGGGRCDHCPLDKLDAAQSSETGLLIRRALDLRAALKLGVQVSLDEIRADEFYAMLILEEERERLDQERINSHGR*
Ga0134098_1015802Ga0134098_10158022F101228MTENYMNINRLCNAWYWVTERWKYFAVGVLAYLLIYCITGSNIQAVSGILIFMLMCLGVLWVNRLPHKDRVWCKRLVGITVILLAATVIITYNPVTALTITGEPSGDQIRWEITDGEPPYTVFVNGVEIVTDYPGTVVLTDSEPGKQYTAVVMDNESVADATVIGEYYTYPLWAWLLFAALLACLVVSIWLPYAAFGAAIAGGFLLLLIAPDPDYAPYLRIFAGAAFIVGLGGLAGRMQS
Ga0134098_1015802Ga0134098_10158024F054066MFGRSRKPKELNRFRVGKGFPGLNAVMYRLMNKPYLDIRIFRGYRQITRIVTPDTGMRRFVVEGIGAFVMPNEDQMLRQLHDSHAYYINYNINSSAPGEITYDLEPVAFVYPPLSPAEFQIELEGQTVADLLAETEKDMSWLWLLAGGAVLIFVLILIFGGV*
Ga0134098_1017347Ga0134098_10173472F010244METFLPGMCGGKRTMTYKVKFTHSDKSHAHITSAKIREGREVYRNPRERFVVLEFEGESGKFREAFWTEDIVKVGLFYG*
Ga0134098_1018365Ga0134098_10183652F001938VIEMIEKIYKNKYMATCDNCGEGQEFDTWTDALEYMFEEGWKKKLVDGEWKHYCPECGEAKEP*
Ga0134098_1018365Ga0134098_10183653F010244MTHKVKFTHSDKSRANINRAELREGREVYRHPEGRYIVLEFQGQSGKFRESFWPEEIIKDKLFL*
Ga0134098_1023627Ga0134098_10236272F021959MSEQEVARLQENIKTLFKDVDELKKDIKEIKKQLANRLPLWATVLMSLLTGIIGWLV*
Ga0134098_1027460Ga0134098_10274602F088753QELEMLKKTNDERLARRLSDWYGFVLSELTSGRVGDFIRSVPADFVALPFNRKRVENLINKCIKTLFEMVKDGKIPFETTAYMAESLRTGRKVRLRHAGQICSKKLGHVLPVVLHKETITEIILREAKFLALSKVAVVVKLYSRIPDKFYPGVCYLSSDCDIAKRALRNITKDFIKDRMSSFPKVNLTKNFFYLESGYGFDESGIIFINKGRVYYRTNDGTHELPDADLDSREELYMQIARAVAKVIEYEVATEFEKEKFAREDDDWVLEIR*
Ga0134098_1030628Ga0134098_10306282F088753QELEMLKKTNDERLARRLSDWYGFVLSELTSGRVGDFIRSVPADFVSLLFNGKIVEKLINKCTRTLFEMAEDGRIPFETTAYMAESLRTGRKFRLRYAGQLCSKKLGPVLPIILHKETMTDMILREAKLLALSKVAVVVKLYCRIPGEFYPAVCCMSSDCNIAKKVLRNITKDFVKDRMSSFPKVDLKKDFFYLESGYGFGENGIIFINKGRAYYRTKDGTHELPDADLDSREELFMQISRAVAKVIEYEVATEFEKEKFAREDDDWVLEIR*
Ga0134098_1031773Ga0134098_10317731F079824MIYGFFGSIPGCPHNRGNHALRGNGKTLCLTFVGYLDSLRGRHVISNYKTSFSEFVPVEEIARMVVEENIRDTTILISEMQVYLNSLGVNSNDLKEFIGSVVGQSRKRNTDIHYDTQRYGDIHPRLRVQTDRAFLPRKFHRDGMPCSMDRCTEDHIIYLYQHDPYLPYEVIRLNAKAFGELYNTDEIIAVPKKKRKTRR
Ga0134098_1043714Ga0134098_10437141F105007KDVVPKWYEKVKREISNGRRGVFMHTVPLGSTEDFYRNLGTTGDPANLACCLTEINDIFREMKRPVCINLVILRDKDQLCTLGDGIPKTLLIKRFDKVSNKNAFRFLRADTLRRLGNFVCIDLDGIKAREFDIACAYRYEMEEKNCAVDRLAQVYAAVFLELESAGIKFLTCSNRAGYAYGYLDELSVFADEKDAERIEGALKTADCIAESLKGAVKEFSVRDLYLFSPAKDGEPSMNDPYFRKLVKSHISQFFP
Ga0134098_1046606Ga0134098_10466063F079824MIYGFFGSIPGCPHNRGNHALRGNGKTLCLTFVGYLDSLRGRHVISNYKTSFSEYVPVEEIARMVVEENIRDTTILITEMQVYLNSLGVNSNDLKEFIGSVVGQSRKRNTDIHYDTQRYGDIHPRLRVQTDRAFLPRKFHRDGMPCSMDRCT
Ga0134098_1049270Ga0134098_10492701F105007KDVVPKWYEKVKREISNGRRGVFMHTVPLGSTEDFYRNLGTAGDPANLASCLTEINYIFREMKRPVCINLVFLRDKDRLCTLGDNIPKTLLVKRFDKVNNKNAFRFLRADTLRRLGNFVCIDLDGIKAREFDIACAYRYEMEEKNCAVDRLAQVYAAVFLELESAGIKFLTCSSRAGYAYGYLDELSVFADEKDAERIEGALKTADCVAESLKGAVKEFSVRDLYLFSPAKD
Ga0134098_1050479Ga0134098_10504792F001938LIEKIYRNKYMATCDNCGTGQECDSWSDVMDFMNYEGWKKRLVDGEWKHYCPECQESEVEEG*
Ga0134098_1063226Ga0134098_10632261F000698LGAKWVELVQLMDKFVPLSRIGIFRNECTRSTPSDPKLTFGAFRTIWVHSGPFGCLTKLGAKRAELVQKFVTRSRVGIFCNERNRSTPLDPKLMFWCVSYYLGAFGTIWLLYESRCKTGRSSAKVRATKLRRNFSQRTHVIHPIGH*
Ga0134098_1067188Ga0134098_10671881F070666PQAIFSVELLPGGGQAHHKMDCILTPTFIGSRCRIRGARQHPAKQST*
Ga0134098_1072012Ga0134098_10720121F064345MKLGAKHTELVQLMQKFVPQSHVRILHNERAQSTLLEPKLMFWCIAHCLGAFG
Ga0134098_1072147Ga0134098_10721471F059695MEWMQVQMQSWQKQVLARLKGPFDVVPQLAYSKTIAKSDKKPSRHFIRSEAFVNEKVIYRKGPSNRANKVLEVGLWVSYILVLKQKF*
Ga0134098_1076985Ga0134098_10769851F007513VEVRETVVVTVLQQVVALPAVLLVVFSTGMDHETEALEEVLRLHAFLAVVFVSHAVDGTVDTLCLVLLTLL*
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