Sample 3300010274

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300010274

3300010274: Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 11_42_5_180_A3 metaG

Overview

Basic Information
IMG/M Taxon OID	3300010274 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0121361 \| Gp0153734 \| Ga0134100
Sample Name	Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 11_42_5_180_A3 metaG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	262498932
Sequencing Scaffolds	18
Novel Protein Genes	20
Associated Families	16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	11
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Dehalobacter	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Thermotalea → Thermotalea metallivorans	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa
Type	Engineered
Taxonomy	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading → Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	na → na → na

Location Information
Location	USA: Dartmouth College, New Hampshire
Coordinates	Lat. (^o)	43.726	Long. (^o)	-72.1429	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001938	Metagenome / Metatranscriptome	614	Y
F004718	Metagenome / Metatranscriptome	426	Y
F010244	Metagenome / Metatranscriptome	306	Y
F020484	Metagenome / Metatranscriptome	223	Y
F021959	Metagenome / Metatranscriptome	216	Y
F029451	Metagenome / Metatranscriptome	188	N
F038199	Metagenome	166	Y
F046814	Metagenome / Metatranscriptome	150	N
F053364	Metagenome / Metatranscriptome	141	Y
F059780	Metagenome	133	Y
F068385	Metagenome / Metatranscriptome	124	Y
F075996	Metagenome / Metatranscriptome	118	N
F076802	Metagenome / Metatranscriptome	117	N
F087072	Metagenome / Metatranscriptome	110	Y
F088752	Metagenome / Metatranscriptome	109	N
F105007	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0134100_1010799	Not Available	3050	Open in IMG/M
Ga0134100_1024812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1432	Open in IMG/M
Ga0134100_1032005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Dehalobacter	1165	Open in IMG/M
Ga0134100_1032621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	1147	Open in IMG/M
Ga0134100_1052867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	782	Open in IMG/M
Ga0134100_1052899	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
Ga0134100_1054959	Not Available	758	Open in IMG/M
Ga0134100_1059519	Not Available	711	Open in IMG/M
Ga0134100_1064682	Not Available	666	Open in IMG/M
Ga0134100_1065974	Not Available	655	Open in IMG/M
Ga0134100_1066094	Not Available	654	Open in IMG/M
Ga0134100_1066547	Not Available	651	Open in IMG/M
Ga0134100_1069999	Not Available	625	Open in IMG/M
Ga0134100_1078929	Not Available	569	Open in IMG/M
Ga0134100_1079128	Not Available	568	Open in IMG/M
Ga0134100_1082744	Not Available	549	Open in IMG/M
Ga0134100_1088584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	521	Open in IMG/M
Ga0134100_1090756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Thermotalea → Thermotalea metallivorans	511	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134100_1010799	Ga0134100_10107995	F087072	MKSRAFTKRMFSLELSEEELSIIAGALYCANSEDIKCFVDKYKYPCSGFNFDEIAECQEKLSEEINKLIENR*
Ga0134100_1024812	Ga0134100_10248121	F001938	ILGIRSRRIEMIEKIYKNKYMATCDNCGTGQECDSWSDVMDFMNYEGWRKRLVDGEWKHYCPECWEAKEP*
Ga0134100_1024812	Ga0134100_10248122	F010244	MTHKVKFTHSDKSRANINRAELREGREVYRHPEGRYIVLEFEGKSGKFREAFWPEEVVKDKLFL*
Ga0134100_1032005	Ga0134100_10320052	F021959	MSEQEVARLQENIKTLFKDVDELKKDIKEIKKQLANRLPLWATVLMSLLTGIIAWLV*
Ga0134100_1032621	Ga0134100_10326213	F029451	VYKMAVDLEDLIASSSSTAGQPSIIEALLSTVDSIFTNNRMLQRSRLSPRNIRGVVRVIGSQAFLRARLERSYKPFLDPDTGEFTYGRYDNRVLTAICEGVLSGRISLDGKSRDEIIRIFQAVGSSVQEEPAGKSGILGRFDY*
Ga0134100_1052867	Ga0134100_10528671	F087072	MQSRVFTKRVFSLELSEEELGIIAGALYCANSEDIKCFVDKYKYPCTGYSFDEVAELQEKLSEEINKLIESK*
Ga0134100_1052899	Ga0134100_10528992	F088752	MKGLQSVYDQIINILKENNELINITPPRPYLIKKDDEERINAETESLLKKGKIKEYNSKMEEAKAYKLYFDEAYKYTNFYEEGDK*
Ga0134100_1054959	Ga0134100_10549591	F075996	MLNSATGQAVGILLPFWSYIPTDRISPKGLLYPVSQVMKEGRLFRFVMLVGEPEEEVSLAGKDFFWQDTDRMYRPKYCAVDITADFKGRICTFTGLYARRDGLYVNGKRAGSFEDMRDIFVHYGLGEVWNLITGDIRPSCCVYKYGRLFVPETEVCLGLLSEKAQFPKGYDMKDLGRVERLLEDAGVFKIPEEISLAEVEEKLS
Ga0134100_1059519	Ga0134100_10595192	F038199	GDIIMEYTQAEFLNIIKQYSNTNRSIIKANLKRIMDIYGIKPADIISLGYSPRNVYAWTNKSTNNIPLFGQALNIAVHFDFNITEFLK*
Ga0134100_1064682	Ga0134100_10646821	F068385	IKETPQFETIMRTKDSIKIKDLSSLKCHKEMKDTLFS*
Ga0134100_1065974	Ga0134100_10659741	F076802	EMPDPSFGAQFFDLPQPEQEMRIMGAYARRNMEDIDAIRRHTSQLEDGTTGIAYQMGLLGLAPPEQFNGGLFQQYYDQGYNARGNQGE*
Ga0134100_1066094	Ga0134100_10660941	F020484	MASTLDVARSEIRRDRLQRWDEMDITLLFGINFGRMRTRWKGKFMHFAMEQCFSTCSVLEIERKIREDEAVMGQRGIEGGDDDV
Ga0134100_1066547	Ga0134100_10665472	F059780	MYYLIGVKKGVHPLGNGGTFITRYKAEYKIRETAQRFAAMYKLEEVYGLKDYSQKLCEMDNTEFVDYIRQNCKRYV*
Ga0134100_1069999	Ga0134100_10699992	F053364	MHRTLHEFNWFCSCVIWGADPLIDIEIIKAEADGDEVRVRALKDRCNEENWIHYRFGEWYSHGSDELIRLAIAFLLYC
Ga0134100_1078929	Ga0134100_10789291	F075996	FWSYIPTDRISPKGLLYPVSQVMKEGRLFRFVMLVGEPEEEVPLAGKDFFWQDTDRMYRPKYCAIDITADFKGRICTFTGLYARRDGLYVNGKRAGSFEDMRDIFVHYGLGEVWNLITGDIRPSCCVYKYGRLFVPETEVCLGLLSEKVQFPKGYDMKDLGRVERLLEDAGVFKIPEEISLAEVEEKLS
Ga0134100_1079128	Ga0134100_10791281	F004718	VSVHLAMFCYYTELGAKWVELVQLMIKFVPQNRIRVFHIERTRSTPLDAKLMNWCVL*
Ga0134100_1082744	Ga0134100_10827441	F046814	NWVVVKEEDNKQDNLMFGFWNSVDCMSCSNEEFSLPNIDGASNSEMKNTDMINARN*
Ga0134100_1085069	Ga0134100_10850691	F105007	INYIFREMKRPVCINLVFLRDKDRLCTLGDNIPKTLLVKRFDKVNNKNAFRFLRADTLRRLGNFVCIDLDGIKAREFDIACAYRYEMEEKNCAVDRLAQVYAAVFLELESAGIKFLTCSSRAGYAYGYLDELSVFADEKDAERIEGALKTADCVAESLKGAVKEFSVRDLYLFSPAKD
Ga0134100_1088584	Ga0134100_10885841	F001938	MIEKIYKNKRMAICDNCGEGQECDSWAEVIDFMNEEGWRKKLFDGEWKHFCPECVEVKEP
Ga0134100_1090756	Ga0134100_10907563	F001938	MIEKIYKNKRMAICDNCGTGQECDSWADVMEFMREEGWKKRLVDGEWKHFCPECQEVKEP

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