Sample 3300010275

Overview

Basic Information
IMG/M Taxon OID	3300010275 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0120398 \| Gp0147146 \| Ga0129310
Sample Name	Western lowland gorrila individual fecal microbial communities from Wisconsin, USA - Go1022A metagenome
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	276642441
Sequencing Scaffolds	16
Novel Protein Genes	17
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp. 4_8_47FAA	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Coprococcus → Coprococcus catus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Western Lowland Gorilla Individual Fecal → Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	USA: Wisconsin
Coordinates	Lat. (^o)	43.78	Long. (^o)	-88.79	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F026592	Metagenome / Metatranscriptome	197	Y
F029444	Metagenome	188	Y
F052660	Metagenome	142	N
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F068855	Metagenome	124	N
F070093	Metagenome	123	N
F074899	Metagenome / Metatranscriptome	119	N
F078004	Metagenome	117	N
F087335	Metagenome	110	N
F090514	Metagenome	108	N
F099269	Metagenome	103	N

Family

Category

Number of Sequences

3D Structure?

F026489

Metagenome

197

F026592

Metagenome / Metatranscriptome

197

F029444

Metagenome

188

F052660

Metagenome

142

F056309

Metagenome

137

F059106

Metagenome

134

F068855

Metagenome

124

F070093

Metagenome

123

F074899

Metagenome / Metatranscriptome

119

F078004

Metagenome

117

F087335

Metagenome

110

F090514

Metagenome

108

F099269

Metagenome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0129310_1001196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp. 4_8_47FAA	24042	Open in IMG/M
Ga0129310_1002170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	15123	Open in IMG/M
Ga0129310_1002549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	13355	Open in IMG/M
Ga0129310_1003887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	9232	Open in IMG/M
Ga0129310_1004336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	8407	Open in IMG/M
Ga0129310_1009271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Coprococcus → Coprococcus catus	4187	Open in IMG/M
Ga0129310_1011659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3394	Open in IMG/M
Ga0129310_1014272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	2828	Open in IMG/M
Ga0129310_1023553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1818	Open in IMG/M
Ga0129310_1034778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1280	Open in IMG/M
Ga0129310_1037274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1201	Open in IMG/M
Ga0129310_1039789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1131	Open in IMG/M
Ga0129310_1051046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	899	Open in IMG/M
Ga0129310_1059873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	779	Open in IMG/M
Ga0129310_1081591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	593	Open in IMG/M
Ga0129310_1086905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	561	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0129310_1001196

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp. 4_8_47FAA

24042

Open in IMG/M

Ga0129310_1002170

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

15123

Open in IMG/M

Ga0129310_1002549

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

13355

Open in IMG/M

Ga0129310_1003887

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium

9232

Open in IMG/M

Ga0129310_1004336

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae

8407

Open in IMG/M

Ga0129310_1009271

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Coprococcus → Coprococcus catus

4187

Open in IMG/M

Ga0129310_1011659

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

3394

Open in IMG/M

Ga0129310_1014272

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia

2828

Open in IMG/M

Ga0129310_1023553

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158

1818

Open in IMG/M

Ga0129310_1034778

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia

1280

Open in IMG/M

Ga0129310_1037274

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

1201

Open in IMG/M

Ga0129310_1039789

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium

1131

Open in IMG/M

Ga0129310_1051046

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

899

Open in IMG/M

Ga0129310_1059873

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

779

Open in IMG/M

Ga0129310_1081591

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena

593

Open in IMG/M

Ga0129310_1086905

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena

561

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0129310_1001196	Ga0129310_10011969	F099269	VGELLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV*
Ga0129310_1002170	Ga0129310_10021708	F074899	MQKFPLDPHRDPHGETCGWKQWNKQAATASFLDKKLPKNLVQQGMEGSTAVGKDEVGSSNLPSSSNINRLNHLI*
Ga0129310_1002549	Ga0129310_10025494	F052660	MCILRILPENTPEKIGQERAGTEWTEDKSKIRLCIRNRSCGRFLHSGILMGIALPIPSHRAKSHDFACWWPAVAGHSRSADALPGKSNS*
Ga0129310_1003887	Ga0129310_10038878	F087335	MCIKERMKDMIELYFNDANLLPENREEEQYAEAALNNILAGKMADTGMCIMPCFYDAPLRNGLLYHLDDGTMLRIRPILNEAGEPELLIRCVTEETVEEMMEVVKP*
Ga0129310_1004336	Ga0129310_10043362	F052660	MRILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYRRFFYGGILMGIVLPIPSHRAKSHDFAHWWPAAAGHSRSADALPGKSNF*
Ga0129310_1009271	Ga0129310_10092715	F059106	LLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVFV*
Ga0129310_1011659	Ga0129310_10116591	F026592	SPQGIAALAVQGGVATLTERSDATFAGKQFSSADRE*
Ga0129310_1014272	Ga0129310_10142724	F068855	VPTVEAQGPQARKTLALQGLQAEKENENANVRNVGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAAW*
Ga0129310_1023553	Ga0129310_10235532	F068855	VEAQGPQVRKILAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW*
Ga0129310_1034778	Ga0129310_10347781	F026592	NRLRTASPQGIAALAAQGGVATLTERSDATFSVMQYPPADGE*
Ga0129310_1037274	Ga0129310_10372741	F090514	MNLRIHALKKASRQRSGVKIAAARFFSILYYPFYAKRSSFFQQNVQPRGNFFAKRPIFVYFADIPPRLTGAKWFVILLTIVPAGSRTRAG
Ga0129310_1039789	Ga0129310_10397892	F026489	VRKGGEGAEARGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKGRATPEKTEDSRLFGVKIF*
Ga0129310_1044994	Ga0129310_10449943	F078004	LQGFVKPDLMVLFPVCFLFFCKSSTGRLSAVAGTAALDIHMICHALVIAVINTFYRLTVDADRMAWMRQGITERFSSLSLLRKALTAGAVTVTGMLAAHHDITLAAQTVLIIGTIFHNAF
Ga0129310_1051046	Ga0129310_10510462	F029444	MGVSEQLTGFELEELMSWTVSNLQRPFREDFSLKKSGIIAEKVSQIFGRRFVGFDS*
Ga0129310_1059873	Ga0129310_10598731	F026489	PKENQKSASDFDALEPRKRGYSPLLTPKKWATPEKTEDSRLFGVKIF*
Ga0129310_1081591	Ga0129310_10815912	F056309	MPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSF
Ga0129310_1086905	Ga0129310_10869051	F070093	LLLAEFCPFRIDPPMEPEQERLSKLYSGPGIQRLLN*

Scaffold ID

Protein ID

Family

Sequence

Ga0129310_1001196

Ga0129310_10011969

F099269

VGELLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV*

Ga0129310_1002170

Ga0129310_10021708

F074899

MQKFPLDPHRDPHGETCGWKQWNKQAATASFLDKKLPKNLVQQGMEGSTAVGKDEVGSSNLPSSSNINRLNHLI*

Ga0129310_1002549

Ga0129310_10025494

F052660

MCILRILPENTPEKIGQERAGTEWTEDKSKIRLCIRNRSCGRFLHSGILMGIALPIPSHRAKSHDFACWWPAVAGHSRSADALPGKSNS*

Ga0129310_1003887

Ga0129310_10038878

F087335

MCIKERMKDMIELYFNDANLLPENREEEQYAEAALNNILAGKMADTGMCIMPCFYDAPLRNGLLYHLDDGTMLRIRPILNEAGEPELLIRCVTEETVEEMMEVVKP*

Ga0129310_1004336

Ga0129310_10043362

F052660

MRILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYRRFFYGGILMGIVLPIPSHRAKSHDFAHWWPAAAGHSRSADALPGKSNF*

Ga0129310_1009271

Ga0129310_10092715

F059106

LLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVFV*

Ga0129310_1011659

Ga0129310_10116591

F026592

SPQGIAALAVQGGVATLTERSDATFAGKQFSSADRE*

Ga0129310_1014272

Ga0129310_10142724

F068855

VPTVEAQGPQARKTLALQGLQAEKENENANVRNVGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAAW*

Ga0129310_1023553

Ga0129310_10235532

F068855

VEAQGPQVRKILAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW*

Ga0129310_1034778

Ga0129310_10347781

F026592

NRLRTASPQGIAALAAQGGVATLTERSDATFSVMQYPPADGE*

Ga0129310_1037274

Ga0129310_10372741

F090514

MNLRIHALKKASRQRSGVKIAAARFFSILYYPFYAKRSSFFQQNVQPRGNFFAKRPIFVYFADIPPRLTGAKWFVILLTIVPAGSRTRAG

Ga0129310_1039789

Ga0129310_10397892

F026489

VRKGGEGAEARGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKGRATPEKTEDSRLFGVKIF*

Ga0129310_1044994

Ga0129310_10449943

F078004

LQGFVKPDLMVLFPVCFLFFCKSSTGRLSAVAGTAALDIHMICHALVIAVINTFYRLTVDADRMAWMRQGITERFSSLSLLRKALTAGAVTVTGMLAAHHDITLAAQTVLIIGTIFHNAF

Ga0129310_1051046

Ga0129310_10510462

F029444

MGVSEQLTGFELEELMSWTVSNLQRPFREDFSLKKSGIIAEKVSQIFGRRFVGFDS*

Ga0129310_1059873

Ga0129310_10598731

F026489

PKENQKSASDFDALEPRKRGYSPLLTPKKWATPEKTEDSRLFGVKIF*

Ga0129310_1081591

Ga0129310_10815912

F056309

MPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSF

Ga0129310_1086905

Ga0129310_10869051

F070093

LLLAEFCPFRIDPPMEPEQERLSKLYSGPGIQRLLN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300010275: Western lowland gorrila individual fecal microbial communities from Wisconsin, USA - Go1022A metagenome

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences