Sample 3300010407

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Sample 3300010407

3300010407: Microbial communities from soil contaminated with neutral mine drainage from mine ?rea in Canaa dos Carajas, Brazil - beginning channel, sample P3

Overview

Basic Information
IMG/M Taxon OID	3300010407 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0121456 \| Gp0155389 \| Ga0136843
Sample Name	Microbial communities from soil contaminated with neutral mine drainage from mine ?rea in Canaa dos Carajas, Brazil - beginning channel, sample P3
Sequencing Status	Permanent Draft
Sequencing Center	Illumina
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	5467419
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Microbial Communities From Soil Contaminated With Neutral Mine Drainage From Mine ??Rea In Canaa Dos Carajas, Brazil
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Microbial Communities From Soil Contaminated With Neutral Mine Drainage From Mine ??Rea In Canaa Dos Carajas, Brazil

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → mine → contaminated soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Canaa dos Carajas, PA, Brazil
Coordinates	Lat. (^o)	-6.42916667	Long. (^o)	-50.06611111	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040563	Metagenome	161	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0136843_103354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	505	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136843_103354	Ga0136843_1033541	F040563	ERTLLVLNRRTQAGVETDQAARFFNRKPDLVVPFTPVFDESADRGRPLVVVRADNAAANVMRDLAAQITVLAPAGR*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.