NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300010428

3300010428: Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 14_58_20_212_A1 metaG



Overview

Basic Information
IMG/M Taxon OID3300010428 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121361 | Gp0153737 | Ga0134103
Sample NameSwitchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 14_58_20_212_A1 metaG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size271588846
Sequencing Scaffolds5
Novel Protein Genes7
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSwitchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa
TypeEngineered
TaxonomyEngineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading → Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)na → na → na

Location Information
LocationUSA: Dartmouth College, New Hampshire
CoordinatesLat. (o)43.726Long. (o)-72.1429Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003438Metagenome / Metatranscriptome486Y
F019116Metagenome / Metatranscriptome231Y
F053045Metagenome / Metatranscriptome141Y
F075996Metagenome / Metatranscriptome118N
F091897Metagenome / Metatranscriptome107Y
F105007Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134103_1003015Not Available11873Open in IMG/M
Ga0134103_1048535All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium832Open in IMG/M
Ga0134103_1069575Not Available625Open in IMG/M
Ga0134103_1081836Not Available551Open in IMG/M
Ga0134103_1086271Not Available530Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134103_1003015Ga0134103_100301513F091897MIGSTIASYPNRAYICDNCGKHLGDRYSRLKGKKQPDVNIIKGKLYCNKCADKHWND*
Ga0134103_1044188Ga0134103_10441881F105007ISYRESDAVFRIAQRFFSRKSYLSLKDVVPKWYEKVKREILNGRRGVFMHTVPLGSTEDFYRNLGTTGDPANLACCLTEINDIFREMKRPVCINLVILRDKDQLCTLGDGIPKTLLIKRFDKVSNKNAFRFLRADTLRRLGNFVCIDLDGIKAREFDIACAYRYEMEEKNCAVDRLAQVYAAVFLELESAGIKFLTCSNRAGYAYGYLDELSVFADEKDAERIEGALKTADCIAESLKGAVKEFSVRDLYLFSPAKDGEPSMNDPYFRKLVKSHISQFFPEKRKDAVEEEEWVDMIR*
Ga0134103_1048535Ga0134103_10485352F019116MAMKKKTSIMLSARDKRLLELLAKKEARSQTAEIEYLIRRRAEELKIEEP*
Ga0134103_1049432Ga0134103_10494321F105007RKSYLSLKDVVPKWYEKVKREISNGRRGVFMHTVPLGSTEDFYRNLGTAGDPANLASCLTEINYIFREMKRPVCINLVFLRDKDRLCTLGDNIPKTLLVKRFDKVNNKNAFRFLRADTLRRLGNFVCIDLDGIKAREFDIACAYRYEMEEKNCAVDRLAQVYAAVFLELESAGIKFLTCSSRAGYAYGYLDELSVFADEKDAERIEGALKTADCVAESLKGAVKEFSVRDLYLFSPAKDGEPSMNDPYFRKLVKSHISQFFPEKRKDAVEEEE
Ga0134103_1069575Ga0134103_10695751F003438IKTVPVVSHIFDVSSSTGRGIEGYLTCWKDELRNHTLGTKAQNMHQLRVLGAK*
Ga0134103_1081836Ga0134103_10818361F053045LALIAPIHSILHRVSCSYEMIPNAPKHYEIHQNLSLGANGVDQVRLLGKITT*
Ga0134103_1086271Ga0134103_10862711F075996QVMKEGRLFRFVMLVGEPEEEVPLAGKDFFWQDTDRMYRPKYCAIDITADFKGRICTFTGLYARRDGLYVNGKRAGSFEDMRDIFVHYGLGEVWNLITGDIRPSCCVYKYGRLFVPETEVCLGLLSEKAQFPKGYDMKDLGRVERLLEDAGVFKIPEEISLAEVEEKLSKFSDLEK
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