NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300010939

3300010939: Marine sediment microbial communities from North Pond, Atlantic Mid-Ocean Ridge - NP_1384A



Overview

Basic Information
IMG/M Taxon OID3300010939 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121566 | Gp0156223 | Ga0138898
Sample NameMarine sediment microbial communities from North Pond, Atlantic Mid-Ocean Ridge - NP_1384A
Sequencing StatusPermanent Draft
Sequencing CenterMarine Biological Laboratory
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size69278125
Sequencing Scaffolds5
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Sediment Microbial Communities From North Pond, Atlantic Mid-Ocean Ridge.
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From North Pond, Atlantic Mid-Ocean Ridge.

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine benthic biome → marine benthic feature → marine sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationNorth Pond, Atlantic Ocean
CoordinatesLat. (o)22.81Long. (o)-46.09Alt. (m)N/ADepth (m)4476
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019543Metagenome / Metatranscriptome229Y
F023365Metagenome210Y
F029588Metagenome / Metatranscriptome188Y
F066733Metagenome / Metatranscriptome126N
F085808Metagenome111Y
F094843Metagenome105Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0138898_100610Not Available5785Open in IMG/M
Ga0138898_103489Not Available1942Open in IMG/M
Ga0138898_105753Not Available1442Open in IMG/M
Ga0138898_112952All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium839Open in IMG/M
Ga0138898_114023All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium793Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0138898_100610Ga0138898_1006109F029588MEVKMTKYSFWIGLGKTAKNSAYLLVPFALALLATVPAGYAWLAGPIVYLLKNYLENK*
Ga0138898_103489Ga0138898_1034892F023365MANIGEAAEIINASELTLEVGPDTYITVLELHLHVGRPEDRTATTDAGALFTYGKGDNWFTATLLPTTPELGDLTPSYNFLTKIDADGDMPSRAWKLVARDLSGNTKTYALTGILRDYDLRKPREGKAEIDLFVRVTSDTITIT*
Ga0138898_103489Ga0138898_1034894F085808MTYVALWQVQTSAADGTEALAGDTHTIDFIDSDNKAPSEGAFISDVEVSFRRAVPENEAVDADNNELQDMGIDGFDVTIVGVIGDADNDAVANPVNKISKWLQDGNTTTLFTKGRYGLRLDRSPQWNVVPTSTFGYHIKDCIFKYIGEKKDLVEYTLKLSLGGDIITAI*
Ga0138898_105753Ga0138898_1057531F066733MLDTVSAEGTLTPGLWIRGDTGATITSSDVASVTLDETGIAFGREYFEDQGYLRSGVKPICVMHPRQWRELITSTEVTNLATRSVPDIWLKAQLEEFMGVQIVVSNAVENFTAQTNNAYNALMFIPKHTYGIAVKRDVTVKFHDIGEDNQVRVNTTWRTKTGVLDASSTVRISTTAP*
Ga0138898_112952Ga0138898_1129521F094843MVACVHVAKILPGEKEEFMQQLKEGFETGREALRSFGFTRIVSFTTPEVVGDGEALLVTVYEAEDPSVVERLYKLEPVLQQEARAHGVLVAPHDHEAVPKNVAFVDMDLTS*
Ga0138898_114023Ga0138898_1140231F019543MTKDTRLTFRVQSGLKKNLEVIAAREGRSVAQICEAFLKAGSEGYKKKGPKYLQRFLSRQKKEDAR*
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