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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300010975 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0085735 | Gp0095235 | Ga0138315 |
| Sample Name | Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Community Metatranscriptome) (version 3) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 427995326 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 8 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 5 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal proximal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Illinois | |||||||
| Coordinates | Lat. (o) | 40.102108 | Long. (o) | -88.227299 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012427 | Metagenome / Metatranscriptome | 280 | N |
| F014707 | Metagenome / Metatranscriptome | 260 | Y |
| F030319 | Metagenome / Metatranscriptome | 185 | Y |
| F037525 | Metagenome / Metatranscriptome | 167 | Y |
| F050074 | Metagenome / Metatranscriptome | 145 | Y |
| F062350 | Metagenome / Metatranscriptome | 130 | N |
| F069549 | Metagenome / Metatranscriptome | 123 | N |
| F078281 | Metagenome / Metatranscriptome | 116 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0138315_1111180 | Not Available | 967 | Open in IMG/M |
| Ga0138315_1153602 | Not Available | 550 | Open in IMG/M |
| Ga0138315_1357485 | Not Available | 1026 | Open in IMG/M |
| Ga0138315_1548845 | Not Available | 1508 | Open in IMG/M |
| Ga0138315_1676039 | Not Available | 1135 | Open in IMG/M |
| Ga0138315_1785808 | All Organisms → cellular organisms → Eukaryota | 660 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0138315_1111180 | Ga0138315_11111801 | F062350 | KFAQNVLRELNKFRQNPRSIQRQCDLVRKGFSRIRHGDPFLKEIEYFIQEIQTMNSLPVLELNDNLTEAAKKELPNFIGNESYKKYRRSEDLDGIVPDLFMKSNPAMVADDGADEPINVLTKVLLDKQDRFKEGRNILCDPKFTQVGIAHEVFEEENWVICIFAGKEEEPEPEIDLPEGDLTELKKAFDILDAKGTGKLDMVEIKKTMDNMRFYQTDPDLYSILKDLSDNDKCSWPKFASYANKKLTDRKTQEGLETIFSLLIDDPDKDTITFETFRKICNELDSGLSEEQIRDMLKASTKNGKEITFEEFEEYMKGLEK* |
| Ga0138315_1118931 | Ga0138315_11189311 | F012427 | KREDTLKRMVALKENYQKNITQNIEKIKDMIKKSDDIDRRINAELRKISNQQPFEFCRDLLDTNVSSDLADECNDINIFQKQEFTRIKQSFIDTNTIVFNDSNALIDQCKTFREYISEKINNFFQNYGKYQSKYAFTVVMNNKEFIVYLIDSNKITKVTYVNDFVIPCYARWIEISGNKLILTGGEKDYIESLNSTYMFKFRQIGDTDEGFSAKVYHKKDMICKRRAHSLIYFNDYIYAISGVDKLEMIKKCEKYDIFNDEWIEIPELNYNRQNAALAIHNQRYLYAFSGYDGFRNVDTFEKLDYLNEEKGWELLELKSTSKDCEEVDVKKNRMGVISLDFDRMLIFGGERNNKEYKDAYIYEFYEKKFYQFADLVRTSNFIMSPVYSQGKYIIFDFLNNIHELNLETLQFEYHVFHKDGENVNL* |
| Ga0138315_1153602 | Ga0138315_11536021 | F037525 | MKDTSDYSLSFAVESSEIVWFQGGIKKSGDFVNENLKAQLPKKKIFKMNSLVYNVESQTRDINLSFDCSYDDELNVLSVILNENINHTNFTKEVAMTLFSFVQKTGIEKLYLIVALKNPNYILLLQEMMTLGFQSETTVKSTTINGDSYKILVIETQDMSINIEEIGI* |
| Ga0138315_1357485 | Ga0138315_13574851 | F014707 | MYDEMKKTNESNLEAIRGMRNEFAEEVDFMERKYEYFLDNNPFDMNIKLVNKIYDNIIELVNQKRDDTLKRMVALKDNYQKNITQNIDKIKDMIKKSDDIDRRINAELRKMAGQQPFEFCRDLLDTNVSSDLADECNDINIFQKQEFTRIKQSFIDTNTIVFNDSNALIDHCKTFREYISEKINNFFQNYTKYMSKYAFTVVMNNKEFIVYLIDSNKITKVTYVNDFVIPCYARWIEISGNKLILTGGEKDYIESLNSTYMFKFRQIGDTDEGFSAKVYHKKDMIYKRRAHSL |
| Ga0138315_1548845 | Ga0138315_15488451 | F078281 | LIDQCKTFREYISEKINNFFQNYGKYQSKYAFTVVMNNKEFIVYLIDSNKITKVTYVNDFVIPCYARWIEISGNKLILTGGEKDYIESLNSTYMFKFRQIGDTDEGFSAKVYHKKDMICKRRAHSLIYFNDYIYAISGVDKLEMIKKCEKYDIFNDEWIEIPELNYNRQNAALAIHNQRYLYAFSGYDGFRNVDTFEKLDFLNEEKGWELLELKSTTKDCEEVDVKKNRMGVISLDFDRMLIFGGERNNKEYKDAYIYEFYEKKFYQFADL |
| Ga0138315_1548845 | Ga0138315_15488452 | F069549 | RDMSEKQKKEEAQVDPVEDFNENCKKHLNTNEKHIWLCYDCHKFTCTKCYARDHKQCWADLIENMYDEMKKTNESNLEAIRGMRNEFAEEVDFMERKYEYFLENNPFDMNIKLVNKIYDNIVELVNQKREDTLKRMVALKDNYQKNITQNIEKIKDMIKKSDDIDRRINAELRKMSGQQPFEFCRDLLDTNVSSDLADECNI* |
| Ga0138315_1676039 | Ga0138315_16760391 | F030319 | SKNSEDFSYLKDAINEDDIARSKGKKKKDIAEEKKIEMLRRDVQILAENKIPLDIKGNHPNFLLFQIDNIQHLNELLDALEKNNSFKGNLEIRSNKFTDNLGLKIAKIISNNSLRSLVIINDTKPFSDRVACVIGDALENNTSLEQFLCYLDIGEISPVHLIKFLTNPNSRLKVLGHLKITKKLFETFSEYLNKGSKLNSLNFYYKPLDEVNLLYKKEIEQNVLDNLSNKIQTDSYILDVNIKANPEEYKKDINEKLTKDINEIIETLKFSANIVRNKQKSILDTDKKFLEQNKFIDNILEKIDREEGKSGQNYIVSVRSYLDRVIGESLNQALYDLEVQRERSPDKKELFTAIGSIKFISQYLLDHKQ* |
| Ga0138315_1785808 | Ga0138315_17858081 | F050074 | LIKVIQKNFEVLHVLNTRVMMKPNITKTYEEIGCFFKNWGRVLTKQKDLIKNYIKDFFKYVNLEGKAYSELIVTREDLKEKYTAENTRVTAKKEKVFATGDVNKFEINFDDKSIDRDRLLRDKPYAFEHICLEDSRSLEKINNQLGYANKMNMRELRKMIKEYSTKFVDNIAEFDKEFYPTINDLLNTWTNMETFVMTAKA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |