Sample 3300010978

3300010978: Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Community Metatranscriptome) (version 7)

Overview

Basic Information
IMG/M Taxon OID	3300010978 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0085735 \| Gp0095235 \| Ga0138320
Sample Name	Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Community Metatranscriptome) (version 7)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	473080356
Sequencing Scaffolds	22
Novel Protein Genes	22
Associated Families	17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	15
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	1
All Organisms → cellular organisms → Eukaryota	5
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Archamoebae → Mastigamoebida → Mastigamoebidae → Mastigamoeba → Mastigamoeba balamuthi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis
Type	Host-Associated
Taxonomy	Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal proximal gut

Location Information
Location	USA: Illinois
Coordinates	Lat. (^o)	40.102108	Long. (^o)	-88.227299	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003473	Metagenome / Metatranscriptome	484	Y
F004661	Metagenome / Metatranscriptome	428	Y
F006777	Metagenome / Metatranscriptome	364	N
F006970	Metagenome / Metatranscriptome	361	Y
F012836	Metagenome / Metatranscriptome	277	Y
F013733	Metagenome / Metatranscriptome	268	N
F014928	Metagenome / Metatranscriptome	259	Y
F033661	Metagenome / Metatranscriptome	176	N
F034020	Metagenome / Metatranscriptome	175	N
F037524	Metagenome / Metatranscriptome	167	Y
F043183	Metagenome / Metatranscriptome	156	Y
F051620	Metagenome / Metatranscriptome	143	Y
F057817	Metagenome / Metatranscriptome	135	N
F071832	Metagenome / Metatranscriptome	121	N
F088021	Metagenome / Metatranscriptome	109	Y
F096413	Metagenome / Metatranscriptome	104	N
F100169	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0138320_1000546	Not Available	804	Open in IMG/M
Ga0138320_1019150	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	985	Open in IMG/M
Ga0138320_1029592	Not Available	972	Open in IMG/M
Ga0138320_1033436	Not Available	1206	Open in IMG/M
Ga0138320_1063735	Not Available	1163	Open in IMG/M
Ga0138320_1101713	All Organisms → cellular organisms → Eukaryota	920	Open in IMG/M
Ga0138320_1162574	Not Available	667	Open in IMG/M
Ga0138320_1188096	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Archamoebae → Mastigamoebida → Mastigamoebidae → Mastigamoeba → Mastigamoeba balamuthi	696	Open in IMG/M
Ga0138320_1209445	Not Available	795	Open in IMG/M
Ga0138320_1227630	Not Available	656	Open in IMG/M
Ga0138320_1311185	Not Available	735	Open in IMG/M
Ga0138320_1313167	Not Available	827	Open in IMG/M
Ga0138320_1320231	All Organisms → cellular organisms → Eukaryota	625	Open in IMG/M
Ga0138320_1430796	Not Available	738	Open in IMG/M
Ga0138320_1510338	Not Available	565	Open in IMG/M
Ga0138320_1655893	All Organisms → cellular organisms → Eukaryota	686	Open in IMG/M
Ga0138320_1660992	All Organisms → cellular organisms → Eukaryota	719	Open in IMG/M
Ga0138320_1663243	Not Available	755	Open in IMG/M
Ga0138320_1687916	Not Available	519	Open in IMG/M
Ga0138320_1754543	Not Available	700	Open in IMG/M
Ga0138320_1774368	All Organisms → cellular organisms → Eukaryota	641	Open in IMG/M
Ga0138320_1832065	Not Available	705	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0138320_1000546	Ga0138320_10005461	F006777	MSKNYPLEEDKIYSNKSKDARTWICGNKHVLYPEHIPGYTGHITGIESNLKKGSNIYGTSYSKASSIAVKGAFCNMIDLPVSERYTSEMKERFQKPKMRSFSEAKVLQKEEEIKKSKMGDGFNLINTENQKDRDMTQGLSESFKNAVFMKRNKVEDLPYILGYTGFRPGVTSQSYFGKSFKNESIRSFNNFLEKQHS*
Ga0138320_1019150	Ga0138320_10191501	F051620	LMSQLPEQILNQPAAQFLGTLGQGMGMIPPAAYQPNIPQQIPQQQNMQIGVGGEDQKNTEKRRRRSKHEQEGRDFVCDFQNCGKSFLSQPALNNHKKTKHPELLEGQPKRGRGRPRKYPPKAAGDFESTKYDSFFNNAPRCPEEGKTIDVKNVVNQVFDLIYKGSYMEKLFSHPKSFEENPILKNLVDDAIIDAQKTKNSKSCDEVFYEYLKSFKDKTNEKYFSLLIKFVLLFRECYDKSKTKDSKEEEKKAVTDHVPPEGLPDLCNEFYGEFMEPNNFFDLDENDRNEIIEIIQHFCIWLFKNEYTKSKLSLAN*
Ga0138320_1029592	Ga0138320_10295921	F057817	KMEANLEKPNEEFQLGNKVPNSFEELNAMTNNRYSNNIEEKPQLESTLRFARSMNLPKFTSTVKSQNCQENQKYEIPESEYIWNPPYLKKTQIFPSYVIASEYPTLQMKKEFTKRLRERSCDPNEYTKNVNVEDFVKYDKEYLWRTSNDIMNRYVPTIERGSNDASTGLKTNISPLLAKRQKEMENKEYFDPLKKYAQIAEDEGNHVERNPLNNHKLIQNSYFPMSRLVGSYWDKVDKESYFKNRYDKLSFDPMNRESGYSTNLRNNIDFKNMFDKNTEAGQPHPKEDYKQTEYRNMYWRNKGFPYQGGKKPIAHTAATLNIEH
Ga0138320_1033436	Ga0138320_10334361	F096413	MAEVQTFTHDVPMRDDKENKTYSVQYQIDIPVVIFSYKVKRGESEVVFETRYAYNSMFEKFQIKKEEVDETNPEKIVKALEKCFETKKVQLEIFQKTNYSIDFRTEDDKTIFKAFLEPKVRCNQAPLKAKPDQKVNIQWEIDIPYVTFTYTDENNVVFEEKMEYDCMFAKFGMQQKDEDKKNGISLQSKITGLFYQNKVLFEPFQIKYYDIEFRGENDNTLFKVFFKPKMNSFVVSMKDEPDKKFKIEWVVDIPNVIFTYKEMKDGKELLYRDQLNYDCTFEKFGIKKEEKDVKNPTALTNVIKKYFEDGKVRVLIFQKVYYALEFLGEENKTLFQVFLRY*
Ga0138320_1063735	Ga0138320_10637351	F003473	SSNKLKILISFFLISSIFSLKLQLIDEDYVLVQIGLPPKSYKLLVDPIGSFTYLFKSLNSTSTLPGEVSIPLEFSNVLGKFKGVWKNDFFYLTDDRLMNFRMDYLEITEKDTKFKCDGVLGLGYSFSQSYGNIYDVLAKMYNVFPSKKVMSYDKKKMQITLGEFPERSNYNPTIYKIYEKKEYPGTFLQLDKLRFMTDYDQTKYLSEEDLKDDALLTLLPVVIAPKHRLKNLYINYTTIFNTTNSTFSKKGVNKNETKFYSDFYLTNPNKHMDYIELVFDRMAYKFRPFEKKEDGKYRAQIRFGNDEKYLYKYWIVGIDVIGVDRFDLNFEDNTVKLYSKPSYDITKSKPQLLRDVFIYMTIVCVMLCFMFLVFCPKKRAKDIKPGE
Ga0138320_1101713	Ga0138320_11017131	F033661	LTFSKSKTFFDLCIKFKEIFLFYIEKILNQKFNLNFYSNEINKNKNLKQNDFTPICYLINTCDYCISTIGALTSSIQEKIEKYQNNFSYDDIVGKFREIYKKCFDLLSTDLKNSVENQLQTGIVKKSWLFSTNKPQDTNSFVIGISKILNDEFNLIKNILQEEFLCHYLNVVPKIVSESLITYLYKIKKIDEVGAQDIYTNIGELKNTILNLYYIVVKPVPGQNKENDSRYNCLNMILKKEMSRVENRLKTLGSIVAEFGNAYKNFVEDKSREDFDKLLQLRGIRKNDIVDYEKIFI*
Ga0138320_1162574	Ga0138320_11625741	F006970	HAYSTPWDQPQYKEEIVSNQKYSKIENVFEIPYLKHTPAYKTGEFFQRFDMCVQKKKNLKQTLDDITKRYNDIMAIFNKELDKTFAGNPTKEQKDRMIEYMIKMLELYHESREVEHYDDIFSKEVEKNKMTFSGAQKEKYDDGMAILKKGFPFQLTVTYSKMNDEFRKIINRCFLEKNMRFYKPKEIEDVTLYKERLMYKTN*
Ga0138320_1188096	Ga0138320_11880961	F037524	MIKKTRNLDVVSVDKLAVDDVSGLQDDRSGRLGVVLALVGSELATAAGHLSIEQRARTMGATATAGHDLKKIAIVRKTILAEGLDLLEGIIRETIADNRSDRVRILLRVLYTDRSHSRSHTSDDRIHTRLSTANIRILLIIRKIRLEGHIARAKDGIEVLEGENVVDLLLTKTLSELGDARTNKDSLAARVALLADVADVVHGRASVADGRL
Ga0138320_1209445	Ga0138320_12094451	F006777	KNMEKKGYYREFYPGYMGHIPYKYEVIGMTVGATNSHIKSLLRKEPDYEKTFVPSIKNDYTYYNKDYFTESMSKKYPLEEDKIYSNKSKDARTWICGNKHVLYPEHIPGYTGHITGIESNLKKGSNIYGTTYSKASSIAIKGAFCNQYDLPVNERYTSEMKDRFQKPRMRSFSEARALQKEEENKRNQNGLGYNIIDNPKDREMTKGLSESFKNAVFMKRKHIETVPYILGYTGFRPGVTSQSYFGKSFANESMKSFNDFLEKQ
Ga0138320_1227630	Ga0138320_12276301	F013733	IWNPPYLKKTQIFPSYVIASEYPTLQMKKEFTRRLRERSCDPNEYTKNVNVEDFVKYDKECLWKTSNDIMNRYIPTIERGKDDASTGLKTNISPIMAKKQKEMENKEYFDPLKKYAQIAEDEGNHIERNPLNNHKLIQNNYFPMSRLFGSYWDKVDKESYFKNRYDKLSFDPLNRESGYSTNLKSNIDFKNMFDKNTEAGQPHPKEDYKQTEYRNMYW
Ga0138320_1311185	Ga0138320_13111851	F006970	PVESDNPLLNKKIVKSTLKTHAYSTPWDQPQYKEQIVSNQKYSKIENVFEIPYLKHIPAYKTGADFFTRFNMCIEKKKNLKKTLDDITKRYNDIMAIFNKELDKTFAGSPTQEQKERMMEYIIKMLELYHEFREVEHYDDIFSKEVEKTNMTFSGAQKEKFEDGMAILKKGFPFQLTVTYSKMNDDFRKIINRCFLEKNMRFYKPKEIADVTLYKEYSCIRLIK*
Ga0138320_1313167	Ga0138320_13131671	F071832	KNLEKRNALEITDLILDKSIKISEITKEYDWTPAETLKVSNLFKNSNLFYTYIRARLNMLTGKGVKTIKDNATKAIDALVKILQGVIEENIKLENNLIYICFEDLLSFYVLSRFNEQSKEIIEELIDIYKEESNIEGLAKMEKIDKIAEDNFFKGGIVTLFQFKLDLITQNKELNLSTLENVFKHESILRNKFFLLNAELIWAYSCYKFINSTEKDSDYNLCLNCFKIFDIAKNYKIFLLTNKSNFISLINKCIDKLRSLIIILFVNNKIHLNNA
Ga0138320_1320231	Ga0138320_13202311	F043183	LCNHGLVEGLRSATSTSVDRKLHLGDLLVDILHELNDEIDKLALVEGLGVLVGDEETDIISDLLTVVKSLNDRLATKHKEVISTLSEETHETLCKDGIELIELLEANADTNAVNRSLNENTLLLVTCNDNRVAKKLLAHLALDLRLVVTLNNLAAKVGDTHGSSDGAADGVSVWLNSSSHSYNKLQEKRDRNNKKAINQKKNKDDQSL
Ga0138320_1430796	Ga0138320_14307961	F100169	LQNQRYEIPQSEYIWDAPYLEKTQIFPSFKIAPDYPTLQMQKDFTKKYLERSVGPDEYTKKIDATDFIKYDSNNLWKSSYDVMTQHVPKIENPENEKNEISPILAKKQAEAEKKEYYDPLKRYAQRAEDEGSNIERNPLNNHKLIQNSYFPMSRLIGSYWDKVDRCSYFRNKYDNVDFDPEQRESGYTTNLQGNIDFTRMFPGQKGSNKDTEYRLNFWREKGFQWRRLTDENSK*
Ga0138320_1510338	Ga0138320_15103381	F034020	KMNKSRPRTGFRPKSRPSLGSTNNNFYKTNPDFRKTFFIQEKETGEPYFKTTRVGSCRKIVVKNGIPFALTYRIKNPRGEPMNHYKYTLKRQPKNPTTYQEDYCRIKTDCHLGMDNKPLIPYNANHKRSQLPEDLGFKVFRNISKFDIGNEGLINRKQWISTYKDSYQPIKTYYISNPGITSDIEKR
Ga0138320_1655893	Ga0138320_16558931	F033661	QNDFTPICYLINTCDYCITTIGALTSSVQEKIEEKYQNNISYDDIVGKFREIYKKCFDLLSIDLKNSVESQLTTGIVKKNWVLANSSSHDTNSFVNGISKILNDEFNLIKNILQEEFLCHYLNVVPKIISESLITYIYKIKKIDEVGAQEIYSNIGELKNIILNLYYVVVKPVPGQNKENDSRYNCLNMILKKEMSRVENRLKTLGSIVAEFGNAYKNFVEDKSREDF
Ga0138320_1660992	Ga0138320_16609921	F033661	GALTSSVQEKIEEKYQNNISYDDIVGKFREIYKKCFDLLSTDLKNSVESQLQTGIIKKNWVLANSNARDTNAFVVGISKILNDEFNLIKNILQEEFLCHYLNVVPKIISESLIVYLYRIKKIDEVGAQEIYTNIGELKNIILNLYYVVVKPVPGQNKENDSRYNCLNMILKKEMSRVENRLKTLGSIVAEFGNAYKNFVEDKSREDFDKLLQLRGIRKNDIVDYEKIFI*
Ga0138320_1663243	Ga0138320_16632431	F100169	PSFKISPEYPTEQMLKEFSRKYYERSCGFNEYTKPIDPTDFIKYDGHNLWKTSYDVMCEHIPKIEGEEGEFEGSDNALKTDASPRLAKRQAEAEKKVYYDPLKKYATIAETEGSHPERNPLNNHKLIQNSYFPMSRLIGSYWDKVDKVSYFRDRYDKLEFNPEERDSGFSTNLQGHIDFANMFTGQKGSNKDTEYRTNFWKKKGFQWRRLTEEPQKNN*
Ga0138320_1687916	Ga0138320_16879161	F004661	RTGELVIEAKERPENLAQHTGELEIESKDRPENILEQRDAIEILGMEKDELQLQPINTLFIAGIPKPENFVQKAGELVVEGMERPENIVQNTGEIVLEAKERAENILEQRDAIEILGMEKDELQLQPINTLFIAGIPKPENFVQRTGELVIEAKERPENLAQHTGELEIESKD
Ga0138320_1754543	Ga0138320_17545431	F012836	KKKMQITLGEFPERSNYNPTVYKIYERKEYPGTFLELDKLRFMTDYDQTKYLSEEDLKDDALLTLLPLIIAPKHRLKNLYTNYTTIFNTSDSTYSKKGVNKNETKFYSDFYLTNPNKHMDYIELVFDRMAYKFRPFEKKEDGKYRPQIRFGNDEKYLYKYWIVGIDVIGVDRFDLNFEDNTVKLYSKPSYDITKSKPQLLRDVFIYMTIVCVMLCFMFLVFCQKKRAKDIKPG
Ga0138320_1774368	Ga0138320_17743681	F014928	VHREIQPVIHENIQQIITKEIQPIINQKIQPVIHREIQPVIHENIQQIITKEIQPIINQKIQPIIHREIQPIIHKEIQPIITTQVQQVINKKIQPVIHREIQPIVHKEIQPVITTEVQQVINQKIQPVIHKEIQPIIHKEVQPIVTTQIQPIINKKIQPVIHKVVQPIIH
Ga0138320_1832065	Ga0138320_18320651	F088021	PDPKVIHSFLKEGTIFILGGDIWGYDIELFNYYNEKESINKYQNLFTYYESNPPTLSEALIQMFVSCKLNKNQVENLTKDILDKCKRKIDPEFNKIKKNYEKIKKEDAYIICSYTCEAKERNYSPYRILNQKLVSDDRRNDLTNISKYLYILLKALRKLPRYYPKNKYLYRSLSIKVNLTIDPYNEKLKPYIKGNIKTFWGFTSALPDPKVIHSFLKEGTIFILGGDIWGYDIEL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300010978: Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Community Metatranscriptome) (version 7)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences