NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300010982

3300010982: Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Community Metatranscriptome) (version 9)



Overview

Basic Information
IMG/M Taxon OID3300010982 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0085735 | Gp0095235 | Ga0138322
Sample NameMetatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Community Metatranscriptome) (version 9)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size682538235
Sequencing Scaffolds4
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Archamoebae → Mastigamoebida → Entamoebidae → Entamoeba1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
LocationUSA: Illinois
CoordinatesLat. (o)40.102108Long. (o)-88.227299Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003473Metagenome / Metatranscriptome484Y
F008288Metagenome / Metatranscriptome335N
F017947Metagenome / Metatranscriptome237N
F037528Metagenome / Metatranscriptome167N
F066347Metagenome / Metatranscriptome126Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0138322_10072829Not Available1307Open in IMG/M
Ga0138322_10074030All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Archamoebae → Mastigamoebida → Entamoebidae → Entamoeba1298Open in IMG/M
Ga0138322_10198167Not Available808Open in IMG/M
Ga0138322_10323960Not Available619Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0138322_10072829Ga0138322_100728291F003473MSSLIKIFLSLFLIQSIFALKLQLIDEDYVKVQIGYPPQEYKLIVDPVSPLTYLFKENPSPTKMEGLLDKPITFSNVFGNFTGVWKNDFFYLTDDRLMNFRFDYVEITKKDTKLLCDGVLGLGYSFEQSYGNIYEVLEKMYNVFPSKKVFSYDKKKMQITLGEIPERSNYNPTVFKIYEKKDMPGVFLKLNKLRFMTDYDQTKYLSEEDLNDDALLTLLPVIIAPKHRLHNLYTNYTTIFNTSKSTYSKKGVDVNMTKFYTDFYLTEPNKHMDYTELVFDRMAYKFRCFEEKNGKFRPKIRFGNQQNYLFKYWVVGVDVIGVDRFDFNFEEGTVKLYSKPSYDITKSKPQLLRDVFVYMTIVCVMLCFGFLVFCQKKKPSEIEPGKELDELL*
Ga0138322_10074030Ga0138322_100740301F066347TSTHTNVQVSLGALDVIVQVVAEGEHNITSVLTLVGLVVTSLKKERGIAVSVEVADTSKLGWRILQVSIASRSTGHVLAELVEEHMAENDIILIIKVDGEDHDDTITVLLEPDRLVGAVVDLNDFATRSALRSLVHHLVKNRGKKVAGHARSKTRDLGCISLREDLANRDGDGEVVLGLGTSEKAAVHLLEVFLATVCLNLIPALARDGNVKLALVGPQMPDNLVEICDCDIDFLSLLSDELGVDDIVNDAVVSLKSQRGCHFL*
Ga0138322_10154769Ga0138322_101547691F008288KMSFLNYTTQQLQGGGKYSVKTKIGNWYEDMVMDETKFKDYIRLKESNNLMVAQKENKYANLLKKIPLEPFNGFLTTGHYFMLRNHKTNGFMVLDIDDKNINYNAAFAVTTSPLMTFACPRSMFKFEKYEPLKHYNCLPEKQAIDNVCYHDKIRIVCHPDVYETPLYLFSPLISPFSYSRFSRNQEVLISSEENFFNCWTIEHIDPNKRLEVKGQPVPSNEPFLIRHDQTGKLLSSDLIDYFNDFGHEYEMCANNYLPYGRYQKILPYDMHEDNVAEVQCNRIEKPENIWSIVDSMNQ*
Ga0138322_10198167Ga0138322_101981671F017947MLEVEIDGVKTHVPQCTCGKCIVRRERKTQDPIIPYNKDLSSIYTSDYPPKKSVKDNGFLNRAKLTGFENSFKETLPGGLTSTMKGDYIPYDVKLEKPKQTTYDLYSGPFTGPTTNEVNYLNWGSSAAGKTKQSTFPDIKIPLRGNSDYNDNYIKYPTESYKKREPFKVTDNQKPHGKLADDTTYNTDFIPHESNNERFKPLMSSNFINSDNPPDNFDTTYKINYVNYDDKMCRLRKYLNARGMRYLVI*
Ga0138322_10323960Ga0138322_103239601F037528MLQTNSIFIKILLISLLYQNILSQRISQDLLGGWGEKFIPVPPSQDFELCIDTIEKYFTSEGNDLAELDIIPIGFFTQSNIGINYRIIIAMKKKSDSAPSIYDFLLRKSERDYMKIISNQNPEESSVKLNEKEEKKMKTAMVKFYFEKLYKVSSMEIQYEYHNINGLNKYAIYDVNAELKNDKEAVNKRLIIVYRNDKTFTVES
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