NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300010992

3300010992: ELM11109_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp)



Overview

Basic Information
IMG/M Taxon OID3300010992 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121658 | Gp0160595 | Ga0139327
Sample NameELM11109_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp)
Sequencing StatusPermanent Draft
Sequencing CenterMolecular Research LP (MR DNA)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size43187297
Sequencing Scaffolds12
Novel Protein Genes13
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → miscellaneous Crenarchaeota group archaeon SMTZ1-551
Not Available5
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCwc Coastal Marshes
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Cwc Coastal Marshes

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → freshwater marsh → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationLouisiana, Port Sulphur, Bay Sansbois east
CoordinatesLat. (o)29.4542Long. (o)-89.76993Alt. (m)N/ADepth (m)0 to .02
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004134Metagenome / Metatranscriptome451Y
F008068Metagenome / Metatranscriptome339Y
F011752Metagenome / Metatranscriptome287Y
F012534Metagenome / Metatranscriptome280N
F028664Metagenome191Y
F045718Metagenome152N
F050784Metagenome145Y
F050864Metagenome144Y
F056324Metagenome / Metatranscriptome137Y
F065729Metagenome / Metatranscriptome127N
F076877Metagenome117Y
F086333Metagenome / Metatranscriptome111Y
F086602Metagenome / Metatranscriptome110Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0139327_100042All Organisms → cellular organisms → Bacteria4374Open in IMG/M
Ga0139327_102141All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → miscellaneous Crenarchaeota group archaeon SMTZ1-551296Open in IMG/M
Ga0139327_103621Not Available1084Open in IMG/M
Ga0139327_104010All Organisms → Viruses → Predicted Viral1050Open in IMG/M
Ga0139327_105051Not Available973Open in IMG/M
Ga0139327_111869All Organisms → cellular organisms → Bacteria738Open in IMG/M
Ga0139327_112789All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium720Open in IMG/M
Ga0139327_116369All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium663Open in IMG/M
Ga0139327_124623Not Available580Open in IMG/M
Ga0139327_125546All Organisms → cellular organisms → Bacteria → Proteobacteria573Open in IMG/M
Ga0139327_125804Not Available571Open in IMG/M
Ga0139327_132949Not Available527Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0139327_100042Ga0139327_1000422F012534MTQYEKDIIWAASQFLYDDLPEDYEKWSDEKFFKFLEDNAWQPFDNYSGQWLWAHIQDLAVSVRKYAQEN*
Ga0139327_102141Ga0139327_1021412F008068MEMDEIIVAGEPCLVIRSPLIPRTLLCNSLLQPLLSRLKGSEEFVAFVSEPCVAPQGLDVVLVTAFWPRCVFDQASEGSVSRPLQTIKPQHLMLVERELYMKLTKKSCLFGDFLDSLLLHNEDRRKVSELLSKVRRWIKNNKSYGLFFLTDVRGTEDFIDQTAAIFEIVVRAEVETEQDEPLLRFTIMKHPNIAKIDKKIEVAFEKGQPKRRRG*
Ga0139327_103621Ga0139327_1036211F050864VLRKGKTFLCSGILILLALALFSGCSLSEKTSAEPVMPEPLEFTYSVSVSAVPIQISSGNLHWHKELPNDSYTLEDMALEIYNFGDFDIPVAQLEITVDEDVSLFNIDQIIAGGARENIVLQPMMEGYDGGIHRVYVALLDDNGGVLYRNEGEDIGPLEPEPGTGSWHPMPS*
Ga0139327_104010Ga0139327_1040102F004134MTEHPTKDWEWEDTAEVAFQEWFNGEYGNFTFRNEWFFGDCEVEDVNTRKDLMTKWLHSAFLTGYNTGRCSKTDD*
Ga0139327_104010Ga0139327_1040103F065729MKKLEFRPVTITYVRTMMLTPTAETFEDWDVEPTQESVYDWAVEEFLTTIEEEAKDGEWRNFTIITEDQPLVEVEWGEEDYD*
Ga0139327_105051Ga0139327_1050511F011752MTATTEDIVAHVREWSLDRAADKSISKTDARAILAEFYEWIEPDGDELEIVSLEPED*
Ga0139327_111869Ga0139327_1118691F086602PDSVTQWEQLQETDFDSEPFVFDKHADLPVEERPAYRLADTEMTINVWEKQKVVDTVTLRAIVVHDPQGEKPAERWPVVLLTDDRQIEARDLLNEFGDHWGQEFGHRIGKHDLYLDIVPQGYVLRTQRDDQGQLHREVEYDQTALFLSAWLRCLVFNLMSRFAQALGGEYAKMWAGTLLRKFIRRPATLYLVGKELHVVFDPFPGQDELQPLLDRLNAKRTPLPWLNNLVVQFSIAQDEPLHPLT
Ga0139327_112789Ga0139327_1127892F050784MKELWTGPEFTRRNRGRMGIMGSIATLLGVAFAIVGIISEASLTLLGLYPTSWYLLAIASLVFSLGCWLGWAVGIYLHAKETGSNE*
Ga0139327_116369Ga0139327_1163691F056324MKGKAVILLMILSFMAAFSGCAGSKTYLMDVRYVPGEKAPPSSKTVGICPFEDARKDKGKETIGVRYRPGKNVDLLNLKGISLSQSVTQAVEDYFAEKGFEVTDCKGWDKSAEGLDGLPKDLSLVIGGKIDSFMVEAKSGVSITNIRYTVKLEALIGKIGERKVVTRTIESSPTRKKVGFDPDKVKAELN
Ga0139327_124623Ga0139327_1246232F045718MIGTDLKVTLSDGSEHTVTVSYSVACAWEDHHPGQAMEAMVRDVKFKQIAYLAYEALRKGGVTVKVWPQFIDTLGDVDFIPKARKKDKQPD*
Ga0139327_125546Ga0139327_1255461F086333MRMLRETESRVDFFKRGAGRNANEREKELKDNKMNIQPQNKLINNVKNRFKNIIDGILIRYDNYVYYKQLERFFKDNRTVLEKLKDKVNLAIACLSKNISKYVGSNNLDGHPHSLFIDGVKDGLLRRDE
Ga0139327_125804Ga0139327_1258041F076877MKEFLNCALLLSGETMKSFLERLAGGRCSFRGLGMGETAAPSLSKGMRRGKNSPVNKSLKKPAREPWN*
Ga0139327_132949Ga0139327_1329491F028664MKENSKILVGGQALRNLGHDRHTNDTDYLINDLSTKDAFITSDAVDYLNANGNKFFAEIFKLEAGNEQATPQSLFELKAYAFVQHCQNFNWAKADACEYDLKFLKREFGCRPQIVKKY
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